Analysis of interatomic Contacts of Structural Units in PDB entry:
6QJI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6QJI entry

There are 6 chains in PDB entry 6QJI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 311	PHE 400
B	GLU 310	ALA 402
C	ARG 309	PHE 400
D	GLU 310	PHE 400
E	ARG 309	LYS 403
F	GLU 310	LYS 403

There are 18 helices in PDB entry 6QJI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	345	350	Right-handed alpha
Helix 2	AA2	A	371	381	Right-handed alpha
Helix 3	AA3	A	393	400	Right-handed alpha
Helix 4	AA4	B	345	350	Right-handed alpha
Helix 5	AA5	B	371	381	Right-handed alpha
Helix 6	AA6	B	393	402	Right-handed alpha
Helix 7	AA7	C	345	350	Right-handed alpha
Helix 8	AA8	C	371	381	Right-handed alpha
Helix 9	AA9	C	393	400	Right-handed alpha
Helix 10	AB1	D	345	350	Right-handed alpha
Helix 11	AB2	D	371	382	Right-handed alpha
Helix 12	AB3	D	393	400	Right-handed alpha
Helix 13	AB4	E	345	350	Right-handed alpha
Helix 14	AB5	E	371	381	Right-handed alpha
Helix 15	AB6	E	393	402	Right-handed alpha
Helix 16	AB7	F	345	350	Right-handed alpha
Helix 17	AB8	F	371	381	Right-handed alpha
Helix 18	AB9	F	393	401	Right-handed alpha

There are 12 sheets in PDB entry 6QJI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	317	first strand
Strand 2	A	385	392	anti-parallel
Strand 3	A	357	362	anti-parallel
Strand 4	A	336	341	anti-parallel
Strand 5	A	325	329	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	317	first strand
Strand 2	A	385	392	anti-parallel
Strand 3	A	357	362	anti-parallel
Strand 4	A	365	366	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	317	first strand
Strand 2	B	385	392	anti-parallel
Strand 3	B	357	362	anti-parallel
Strand 4	B	334	341	anti-parallel
Strand 5	B	325	331	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	317	first strand
Strand 2	B	385	392	anti-parallel
Strand 3	B	357	362	anti-parallel
Strand 4	B	365	366	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	312	317	first strand
Strand 2	C	385	392	anti-parallel
Strand 3	C	357	362	anti-parallel
Strand 4	C	365	366	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	325	331	first strand
Strand 2	C	334	341	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	312	317	first strand
Strand 2	D	385	392	anti-parallel
Strand 3	D	357	362	anti-parallel
Strand 4	D	365	366	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	325	329	first strand
Strand 2	D	336	341	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	312	317	first strand
Strand 2	E	385	392	anti-parallel
Strand 3	E	357	362	anti-parallel
Strand 4	E	365	366	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	325	329	first strand
Strand 2	E	336	341	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	312	317	first strand
Strand 2	F	385	392	anti-parallel
Strand 3	F	357	362	anti-parallel
Strand 4	F	365	366	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	325	329	first strand
Strand 2	F	336	341	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6QJI

Analysis of interatomic Contacts of Structural Units in PDB entry:
6QJI