Analysis of interatomic Contacts of Structural Units in PDB entry:
6QJZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QJZ entry

There is 1 chain in PDB entry 6QJZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2LYS 520
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6QJZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 18Right-handed alpha
Helix 2
AA2
A
34 51Right-handed alpha
Helix 3
AA3
A
66 79Right-handed alpha
Helix 4
AA4
A
91 102Right-handed alpha
Helix 5
AA5
A
114 124Right-handed alpha
Helix 6
AA6
A
191 206Right-handed alpha
Helix 7
AA7
A
221 227Right-handed alpha
Helix 8
AA8
A
229 235Right-handed alpha
Helix 9
AA9
A
251 259Right-handed alpha
Helix 10
AB1
A
267 281Right-handed alpha
Helix 11
AB2
A
300 312Right-handed alpha
Helix 12
AB3
A
322 325Right-handed 310
Helix 13
AB4
A
384 392Right-handed alpha
Helix 14
AB5
A
393 396Right-handed 310
Helix 15
AB6
A
429 440Right-handed alpha
Helix 16
AB7
A
473 485Right-handed alpha
Helix 17
AB8
A
511 518Right-handed alpha
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There are 7 sheets in PDB entry 6QJZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 33first strand
Strand 2
A
22 26anti-parallel
Strand 3
A
238 241parallel
Strand 4
A
212 214parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 85first strand
Strand 2
A
58 61parallel
Strand 3
A
104 109parallel
Strand 4
A
128 135parallel
Strand 5
A
140 146anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 177first strand
Strand 2
A
185 190anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 266first strand
Strand 2
A
291 294parallel
Strand 3
A
315 321parallel
Strand 4
A
326 330anti-parallel
Strand 5
A
346 347anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 355first strand
Strand 2
A
368 373anti-parallel
Strand 3
A
397 405anti-parallel
Strand 4
A
411 416anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
421 423first strand
Strand 2
A
426 428anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
443 453first strand
Strand 2
A
457 466anti-parallel
Strand 3
A
494 496parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il