Analysis of interatomic Contacts of Structural Units in PDB entry:
6QK7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6QK7 entry

There are 4 chains in PDB entry 6QK7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 18	PHE 1349
B	GLU 3	GLU 788
C	SER 94	ILE 557
D	LEU 1006	PHE 1349

There are 67 helices in PDB entry 6QK7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	502	508	Right-handed alpha
Helix 2	AA2	A	741	755	Right-handed alpha
Helix 3	AA3	A	759	768	Right-handed alpha
Helix 4	AA4	A	773	778	Right-handed alpha
Helix 5	AA5	A	779	786	Right-handed alpha
Helix 6	AA6	A	786	794	Right-handed alpha
Helix 7	AA7	A	796	806	Right-handed alpha
Helix 8	AA8	A	837	843	Right-handed alpha
Helix 9	AA9	A	853	866	Right-handed alpha
Helix 10	AB1	A	871	876	Right-handed alpha
Helix 11	AB2	A	876	885	Right-handed alpha
Helix 12	AB3	A	891	899	Right-handed alpha
Helix 13	AB4	A	906	916	Right-handed alpha
Helix 14	AB5	A	920	929	Right-handed alpha
Helix 15	AB6	A	933	942	Right-handed alpha
Helix 16	AB7	A	947	960	Right-handed alpha
Helix 17	AB8	A	962	973	Right-handed alpha
Helix 18	AB9	A	976	986	Right-handed alpha
Helix 19	AC1	A	994	1004	Right-handed alpha
Helix 20	AC2	A	1006	1013	Right-handed alpha
Helix 21	AC3	A	1017	1035	Right-handed alpha
Helix 22	AC4	A	1037	1049	Right-handed alpha
Helix 23	AC5	A	1050	1062	Right-handed alpha
Helix 24	AC6	A	1063	1074	Right-handed alpha
Helix 25	AC7	A	1075	1077	Right-handed 310
Helix 26	AC8	A	1078	1092	Right-handed alpha
Helix 27	AC9	A	1095	1106	Right-handed alpha
Helix 28	AD1	A	1109	1120	Right-handed alpha
Helix 29	AD2	A	1122	1133	Right-handed alpha
Helix 30	AD3	A	1137	1142	Right-handed alpha
Helix 31	AD4	A	1142	1172	Right-handed alpha
Helix 32	AD5	A	1253	1255	Right-handed 310
Helix 33	AD6	A	1256	1283	Right-handed alpha
Helix 34	AD7	A	1285	1303	Right-handed alpha
Helix 35	AD8	B	253	257	Right-handed 310
Helix 36	AD9	B	468	478	Right-handed alpha
Helix 37	AE1	B	538	545	Right-handed alpha
Helix 38	AE2	C	110	115	Right-handed alpha
Helix 39	AE3	C	140	150	Right-handed alpha
Helix 40	AE4	C	152	164	Right-handed alpha
Helix 41	AE5	C	182	186	Right-handed 310
Helix 42	AE6	C	187	204	Right-handed alpha
Helix 43	AE7	C	209	217	Right-handed alpha
Helix 44	AE8	C	237	248	Right-handed alpha
Helix 45	AE9	C	260	267	Right-handed alpha
Helix 46	AF1	C	272	287	Right-handed alpha
Helix 47	AF2	C	304	316	Right-handed alpha
Helix 48	AF3	C	337	343	Right-handed alpha
Helix 49	AF4	C	352	362	Right-handed alpha
Helix 50	AF5	C	363	365	Right-handed 310
Helix 51	AF6	C	391	400	Right-handed alpha
Helix 52	AF7	C	472	476	Right-handed 310
Helix 53	AF8	C	507	523	Right-handed alpha
Helix 54	AF9	C	537	543	Right-handed alpha
Helix 55	AG1	D	1007	1013	Right-handed alpha
Helix 56	AG2	D	1017	1035	Right-handed alpha
Helix 57	AG3	D	1037	1047	Right-handed alpha
Helix 58	AG4	D	1050	1061	Right-handed alpha
Helix 59	AG5	D	1063	1075	Right-handed alpha
Helix 60	AG6	D	1078	1093	Right-handed alpha
Helix 61	AG7	D	1095	1106	Right-handed alpha
Helix 62	AG8	D	1109	1120	Right-handed alpha
Helix 63	AG9	D	1122	1133	Right-handed alpha
Helix 64	AH1	D	1137	1142	Right-handed alpha
Helix 65	AH2	D	1142	1169	Right-handed alpha
Helix 66	AH3	D	1253	1283	Right-handed alpha
Helix 67	AH4	D	1285	1310	Right-handed alpha

There are 32 sheets in PDB entry 6QK7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	29	first strand
Strand 2	A	418	427	anti-parallel
Strand 3	A	410	415	anti-parallel
Strand 4	A	398	403	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	53	first strand
Strand 2	A	58	64	anti-parallel
Strand 3	A	71	77	anti-parallel
Strand 4	A	83	86	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	99	first strand
Strand 2	A	112	113	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	110	first strand
Strand 2	A	120	122	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	147	first strand
Strand 2	A	160	161	anti-parallel
Strand 3	A	165	168	anti-parallel
Strand 4	A	177	179	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	253	255	first strand
Strand 2	A	261	268	anti-parallel
Strand 3	A	282	289	anti-parallel
Strand 4	A	294	297	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	337	first strand
Strand 2	A	343	349	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	362	first strand
Strand 2	A	369	372	anti-parallel
Strand 3	A	376	382	anti-parallel
Strand 4	A	387	394	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	429	430	first strand
Strand 2	A	441	446	anti-parallel
Strand 3	A	449	454	anti-parallel
Strand 4	A	469	470	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	478	480	first strand
Strand 2	A	486	490	anti-parallel
Strand 3	A	494	499	anti-parallel
Strand 4	A	513	519	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	529	536	first strand
Strand 2	A	540	546	anti-parallel
Strand 3	A	551	557	anti-parallel
Strand 4	A	565	567	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	529	536	first strand
Strand 2	A	540	546	anti-parallel
Strand 3	A	551	557	anti-parallel
Strand 4	A	571	572	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	576	581	first strand
Strand 2	A	588	592	anti-parallel
Strand 3	A	596	600	anti-parallel
Strand 4	A	606	611	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	616	625	first strand
Strand 2	A	640	648	anti-parallel
Strand 3	A	653	654	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	666	670	first strand
Strand 2	A	673	677	anti-parallel
Strand 3	A	682	687	anti-parallel
Strand 4	A	708	710	anti-parallel

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There are 10 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	716	721	first strand
Strand 2	A	726	730	anti-parallel
Strand 3	A	736	739	anti-parallel
Strand 4	C	430	438	anti-parallel
Strand 5	C	441	450	anti-parallel
Strand 6	C	455	464	anti-parallel
Strand 7	C	480	488	anti-parallel
Strand 8	C	528	531	parallel
Strand 9	C	552	556	anti-parallel
Strand 10	C	547	549	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	11	first strand
Strand 2	B	780	786	anti-parallel
Strand 3	B	768	775	anti-parallel
Strand 4	B	755	760	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	23	first strand
Strand 2	B	30	34	anti-parallel
Strand 3	B	37	41	anti-parallel
Strand 4	B	51	55	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	67	first strand
Strand 2	B	73	78	anti-parallel
Strand 3	B	83	88	anti-parallel
Strand 4	B	94	100	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	113	first strand
Strand 2	B	116	121	anti-parallel
Strand 3	B	125	131	anti-parallel
Strand 4	B	138	145	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	161	first strand
Strand 2	B	165	171	anti-parallel
Strand 3	B	177	184	anti-parallel
Strand 4	B	189	198	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	210	first strand
Strand 2	B	218	224	anti-parallel
Strand 3	B	232	236	anti-parallel
Strand 4	B	268	273	anti-parallel
Strand 5	B	259	262	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	289	first strand
Strand 2	B	296	300	anti-parallel
Strand 3	B	305	310	anti-parallel
Strand 4	B	317	323	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	344	348	first strand
Strand 2	B	353	358	anti-parallel
Strand 3	B	364	370	anti-parallel
Strand 4	B	374	378	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	388	393	first strand
Strand 2	B	400	404	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	412	417	first strand
Strand 2	B	423	431	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	444	447	first strand
Strand 2	B	452	456	anti-parallel
Strand 3	B	462	466	anti-parallel
Strand 4	B	550	554	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	561	566	first strand
Strand 2	B	572	577	anti-parallel
Strand 3	B	588	591	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	609	614	first strand
Strand 2	B	620	625	anti-parallel
Strand 3	B	630	635	anti-parallel
Strand 4	B	642	644	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	656	661	first strand
Strand 2	B	669	674	anti-parallel
Strand 3	B	678	685	anti-parallel
Strand 4	B	691	699	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	704	709	first strand
Strand 2	B	718	724	anti-parallel
Strand 3	B	729	734	anti-parallel
Strand 4	B	741	744	anti-parallel

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There are 7 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	102	first strand
Strand 2	C	173	179	parallel
Strand 3	C	223	231	parallel
Strand 4	C	251	257	parallel
Strand 5	C	289	294	parallel
Strand 6	C	323	326	parallel
Strand 7	C	370	373	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6QK7

Analysis of interatomic Contacts of Structural Units in PDB entry:
6QK7