Analysis of interatomic Contacts of Structural Units in PDB entry:
6QK8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QK8 entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 12 chains in PDB entry 6QK8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3SER 235
B
 ARG 5SER 235
C
 GLU 6THR 234
D
 THR 3THR 234
E
 ARG 478PHE 480
E
 LEU 482MET 485
F
 ARG 478PHE 480
F
 LEU 482MET 485
G
 ARG 478PHE 480
G
 LEU 482HIS 483
H
 ARG 478PHE 480
H
 LEU 482MET 485
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 6QK8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 18Right-handed alpha
Helix 2
AA2
A
20 33Right-handed alpha
Helix 3
AA3
A
41 69Right-handed alpha
Helix 4
AA4
A
79 109Right-handed alpha
Helix 5
AA5
A
109 114Right-handed alpha
Helix 6
AA6
A
116 136Right-handed alpha
Helix 7
AA7
A
140 165Right-handed alpha
Helix 8
AA8
A
169 186Right-handed alpha
Helix 9
AA9
A
189 207Right-handed alpha
Helix 10
AB1
A
208 211Right-handed 310
Helix 11
AB2
A
215 234Right-handed alpha
Helix 12
AB3
B
6 18Right-handed alpha
Helix 13
AB4
B
20 34Right-handed alpha
Helix 14
AB5
B
39 73Right-handed alpha
Helix 15
AB6
B
77 109Right-handed alpha
Helix 16
AB7
B
116 138Right-handed alpha
Helix 17
AB8
B
140 165Right-handed alpha
Helix 18
AB9
B
169 186Right-handed alpha
Helix 19
AC1
B
189 204Right-handed alpha
Helix 20
AC2
B
215 234Right-handed alpha
Helix 21
AC3
C
7 18Right-handed alpha
Helix 22
AC4
C
20 34Right-handed alpha
Helix 23
AC5
C
39 68Right-handed alpha
Helix 24
AC6
C
78 109Right-handed alpha
Helix 25
AC7
C
116 136Right-handed alpha
Helix 26
AC8
C
140 165Right-handed alpha
Helix 27
AC9
C
169 186Right-handed alpha
Helix 28
AD1
C
189 204Right-handed alpha
Helix 29
AD2
C
218 234Right-handed alpha
Helix 30
AD3
D
5 18Right-handed alpha
Helix 31
AD4
D
20 34Right-handed alpha
Helix 32
AD5
D
39 70Right-handed alpha
Helix 33
AD6
D
82 109Right-handed alpha
Helix 34
AD7
D
109 114Right-handed alpha
Helix 35
AD8
D
116 136Right-handed alpha
Helix 36
AD9
D
140 164Right-handed alpha
Helix 37
AE1
D
169 186Right-handed alpha
Helix 38
AE2
D
189 204Right-handed alpha
Helix 39
AE3
D
216 234Right-handed alpha
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There are no sheets in PDB entry 6QK8
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