Analysis of interatomic Contacts of Structural Units in PDB entry:
6QKC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6QKC entry

There are 6 chains in PDB entry 6QKC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 391	LYS 813
B	VAL 396	ARG 819
C	TYR 391	LYS 813
D	VAL 396	ARG 819
I	VAL 19	ARG 231
J	VAL 19	ARG 231

There are 74 helices in PDB entry 6QKC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	407	411	Right-handed 310
Helix 2	AA2	A	412	415	Right-handed 310
Helix 3	AA3	A	419	433	Right-handed alpha
Helix 4	AA4	A	459	465	Right-handed alpha
Helix 5	AA5	A	478	485	Right-handed alpha
Helix 6	AA6	A	518	541	Right-handed alpha
Helix 7	AA7	A	570	581	Right-handed alpha
Helix 8	AA8	A	591	625	Right-handed alpha
Helix 9	AA9	A	631	637	Right-handed alpha
Helix 10	AB1	A	649	657	Right-handed alpha
Helix 11	AB2	A	662	672	Right-handed alpha
Helix 12	AB3	A	681	693	Right-handed alpha
Helix 13	AB4	A	702	711	Right-handed alpha
Helix 14	AB5	A	738	753	Right-handed alpha
Helix 15	AB6	A	754	764	Right-handed alpha
Helix 16	AB7	A	789	813	Right-handed alpha
Helix 17	AB8	B	423	433	Right-handed alpha
Helix 18	AB9	B	461	469	Right-handed alpha
Helix 19	AC1	B	482	489	Right-handed alpha
Helix 20	AC2	B	515	519	Right-handed 310
Helix 21	AC3	B	522	545	Right-handed alpha
Helix 22	AC4	B	572	585	Right-handed alpha
Helix 23	AC5	B	595	624	Right-handed alpha
Helix 24	AC6	B	637	643	Right-handed alpha
Helix 25	AC7	B	653	661	Right-handed alpha
Helix 26	AC8	B	664	676	Right-handed alpha
Helix 27	AC9	B	685	697	Right-handed alpha
Helix 28	AD1	B	706	715	Right-handed alpha
Helix 29	AD2	B	742	757	Right-handed alpha
Helix 30	AD3	B	758	767	Right-handed alpha
Helix 31	AD4	B	788	791	Right-handed 310
Helix 32	AD5	B	792	819	Right-handed alpha
Helix 33	AD6	C	407	411	Right-handed 310
Helix 34	AD7	C	412	415	Right-handed 310
Helix 35	AD8	C	419	433	Right-handed alpha
Helix 36	AD9	C	459	465	Right-handed alpha
Helix 37	AE1	C	478	485	Right-handed alpha
Helix 38	AE2	C	518	541	Right-handed alpha
Helix 39	AE3	C	570	581	Right-handed alpha
Helix 40	AE4	C	591	625	Right-handed alpha
Helix 41	AE5	C	631	637	Right-handed alpha
Helix 42	AE6	C	649	657	Right-handed alpha
Helix 43	AE7	C	662	672	Right-handed alpha
Helix 44	AE8	C	681	693	Right-handed alpha
Helix 45	AE9	C	702	711	Right-handed alpha
Helix 46	AF1	C	738	753	Right-handed alpha
Helix 47	AF2	C	754	764	Right-handed alpha
Helix 48	AF3	C	789	813	Right-handed alpha
Helix 49	AF4	D	423	433	Right-handed alpha
Helix 50	AF5	D	461	469	Right-handed alpha
Helix 51	AF6	D	482	489	Right-handed alpha
Helix 52	AF7	D	515	519	Right-handed 310
Helix 53	AF8	D	522	545	Right-handed alpha
Helix 54	AF9	D	572	585	Right-handed alpha
Helix 55	AG1	D	595	624	Right-handed alpha
Helix 56	AG2	D	637	643	Right-handed alpha
Helix 57	AG3	D	653	661	Right-handed alpha
Helix 58	AG4	D	664	676	Right-handed alpha
Helix 59	AG5	D	685	697	Right-handed alpha
Helix 60	AG6	D	706	715	Right-handed alpha
Helix 61	AG7	D	742	757	Right-handed alpha
Helix 62	AG8	D	758	767	Right-handed alpha
Helix 63	AG9	D	788	791	Right-handed 310
Helix 64	AH1	D	792	819	Right-handed alpha
Helix 65	AH2	I	20	41	Right-handed alpha
Helix 66	AH3	I	118	127	Right-handed alpha
Helix 67	AH4	I	128	150	Right-handed alpha
Helix 68	AH5	I	157	184	Right-handed alpha
Helix 69	AH6	I	202	231	Right-handed alpha
Helix 70	AH7	J	20	41	Right-handed alpha
Helix 71	AH8	J	118	127	Right-handed alpha
Helix 72	AH9	J	128	150	Right-handed alpha
Helix 73	AI1	J	157	184	Right-handed alpha
Helix 74	AI2	J	202	231	Right-handed alpha

There are 25 sheets in PDB entry 6QKC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	437	440	first strand
Strand 2	A	392	395	parallel
Strand 3	A	470	471	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	404	first strand
Strand 2	A	417	418	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	447	449	first strand
Strand 2	A	456	458	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	486	487	first strand
Strand 2	A	731	732	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	493	494	first strand
Strand 2	A	726	727	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	642	644	first strand
Strand 2	A	696	701	parallel
Strand 3	A	496	501	anti-parallel
Strand 4	A	716	719	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	442	444	first strand
Strand 2	B	397	399	parallel
Strand 3	B	474	475	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	407	408	first strand
Strand 2	B	421	422	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	490	491	first strand
Strand 2	B	735	736	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	496	498	first strand
Strand 2	B	730	732	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	682	683	first strand
Strand 2	B	646	650	parallel
Strand 3	B	700	705	parallel
Strand 4	B	500	505	anti-parallel
Strand 5	B	720	723	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	437	440	first strand
Strand 2	C	392	395	parallel
Strand 3	C	470	471	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	403	404	first strand
Strand 2	C	417	418	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	447	449	first strand
Strand 2	C	456	458	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	486	487	first strand
Strand 2	C	731	732	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	493	494	first strand
Strand 2	C	726	727	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	642	644	first strand
Strand 2	C	696	701	parallel
Strand 3	C	496	501	anti-parallel
Strand 4	C	716	719	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	442	444	first strand
Strand 2	D	397	399	parallel
Strand 3	D	474	480	parallel
Strand 4	D	730	736	anti-parallel
Strand 5	D	490	491	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	442	444	first strand
Strand 2	D	397	399	parallel
Strand 3	D	474	480	parallel
Strand 4	D	730	736	anti-parallel
Strand 5	D	496	498	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	407	408	first strand
Strand 2	D	421	422	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	682	683	first strand
Strand 2	D	646	650	parallel
Strand 3	D	700	705	parallel
Strand 4	D	500	505	anti-parallel
Strand 5	D	720	723	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	45	46	first strand
Strand 2	I	200	201	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	81	84	first strand
Strand 2	I	88	92	anti-parallel
Strand 3	I	101	102	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	45	46	first strand
Strand 2	J	200	201	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	81	84	first strand
Strand 2	J	88	92	anti-parallel
Strand 3	J	101	102	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6QKC

Analysis of interatomic Contacts of Structural Units in PDB entry:
6QKC