Analysis of interatomic Contacts of Structural Units in PDB entry:
6QKG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6QKG entry

There are 2 chains in PDB entry 6QKG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 13	SER 673
B	MET 13	VAL 653

There are 56 helices in PDB entry 6QKG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	50	63	Right-handed alpha
Helix 2	AA2	A	76	80	Right-handed 310
Helix 3	AA3	A	90	92	Right-handed 310
Helix 4	AA4	A	93	107	Right-handed alpha
Helix 5	AA5	A	118	122	Right-handed 310
Helix 6	AA6	A	123	128	Right-handed 310
Helix 7	AA7	A	163	184	Right-handed alpha
Helix 8	AA8	A	197	204	Right-handed alpha
Helix 9	AA9	A	217	237	Right-handed alpha
Helix 10	AB1	A	257	272	Right-handed alpha
Helix 11	AB2	A	301	311	Right-handed alpha
Helix 12	AB3	A	324	334	Right-handed alpha
Helix 13	AB4	A	343	349	Right-handed alpha
Helix 14	AB5	A	351	358	Right-handed alpha
Helix 15	AB6	A	360	364	Right-handed 310
Helix 16	AB7	A	374	380	Right-handed alpha
Helix 17	AB8	A	397	401	Right-handed 310
Helix 18	AB9	A	417	430	Right-handed alpha
Helix 19	AC1	A	445	451	Right-handed alpha
Helix 20	AC2	A	452	457	Right-handed 310
Helix 21	AC3	A	458	474	Right-handed alpha
Helix 22	AC4	A	484	492	Right-handed alpha
Helix 23	AC5	A	519	525	Right-handed alpha
Helix 24	AC6	A	540	553	Right-handed alpha
Helix 25	AC7	A	571	585	Right-handed alpha
Helix 26	AC8	A	630	637	Right-handed alpha
Helix 27	AC9	A	648	652	Right-handed 310
Helix 28	AD1	A	655	670	Right-handed alpha
Helix 29	AD2	B	50	63	Right-handed alpha
Helix 30	AD3	B	76	80	Right-handed 310
Helix 31	AD4	B	90	92	Right-handed 310
Helix 32	AD5	B	93	107	Right-handed alpha
Helix 33	AD6	B	118	122	Right-handed 310
Helix 34	AD7	B	123	128	Right-handed 310
Helix 35	AD8	B	163	184	Right-handed alpha
Helix 36	AD9	B	197	204	Right-handed alpha
Helix 37	AE1	B	217	237	Right-handed alpha
Helix 38	AE2	B	257	272	Right-handed alpha
Helix 39	AE3	B	301	310	Right-handed alpha
Helix 40	AE4	B	324	334	Right-handed alpha
Helix 41	AE5	B	343	349	Right-handed alpha
Helix 42	AE6	B	351	358	Right-handed alpha
Helix 43	AE7	B	360	364	Right-handed 310
Helix 44	AE8	B	374	380	Right-handed alpha
Helix 45	AE9	B	397	401	Right-handed 310
Helix 46	AF1	B	417	430	Right-handed alpha
Helix 47	AF2	B	445	451	Right-handed alpha
Helix 48	AF3	B	452	457	Right-handed 310
Helix 49	AF4	B	458	474	Right-handed alpha
Helix 50	AF5	B	484	492	Right-handed alpha
Helix 51	AF6	B	519	525	Right-handed alpha
Helix 52	AF7	B	540	553	Right-handed alpha
Helix 53	AF8	B	571	585	Right-handed alpha
Helix 54	AF9	B	630	637	Right-handed alpha
Helix 55	AG1	B	648	652	Right-handed 310
Helix 56	AG2	B	655	670	Right-handed alpha

There are 16 sheets in PDB entry 6QKG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	23	first strand
Strand 2	A	26	28	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	34	first strand
Strand 2	A	67	69	parallel
Strand 3	A	110	115	parallel
Strand 4	A	188	193	parallel
Strand 5	A	242	249	parallel
Strand 6	A	277	281	parallel
Strand 7	A	316	318	parallel
Strand 8	A	339	342	parallel
Strand 9	A	32	34	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	134	first strand
Strand 2	A	137	139	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	145	first strand
Strand 2	A	160	161	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	476	478	first strand
Strand 2	A	433	437	parallel
Strand 3	A	410	414	parallel
Strand 4	A	495	498	parallel
Strand 5	A	643	646	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	502	504	first strand
Strand 2	A	626	628	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	517	518	first strand
Strand 2	A	619	622	parallel
Strand 3	A	533	537	parallel
Strand 4	A	556	560	parallel
Strand 5	A	588	590	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	594	599	first strand
Strand 2	A	602	606	anti-parallel
Strand 3	A	612	616	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	23	first strand
Strand 2	B	26	28	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	34	first strand
Strand 2	B	67	69	parallel
Strand 3	B	110	115	parallel
Strand 4	B	188	193	parallel
Strand 5	B	242	249	parallel
Strand 6	B	277	281	parallel
Strand 7	B	316	318	parallel
Strand 8	B	339	342	parallel
Strand 9	B	32	34	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	134	first strand
Strand 2	B	137	139	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	145	first strand
Strand 2	B	160	161	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	476	478	first strand
Strand 2	B	433	437	parallel
Strand 3	B	410	414	parallel
Strand 4	B	495	498	parallel
Strand 5	B	643	646	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	502	504	first strand
Strand 2	B	626	628	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	517	518	first strand
Strand 2	B	619	622	parallel
Strand 3	B	533	537	parallel
Strand 4	B	556	560	parallel
Strand 5	B	588	590	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	594	599	first strand
Strand 2	B	602	606	anti-parallel
Strand 3	B	612	616	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6QKG

Analysis of interatomic Contacts of Structural Units in PDB entry:
6QKG