Analysis of interatomic Contacts of Structural Units in PDB entry:
6QKJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QKJ entry

There are 2 chains in PDB entry 6QKJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 7SER 434
B
 SER 17SER 434
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 6QKJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 38Right-handed alpha
Helix 2
AA2
A
41 46Right-handed 310
Helix 3
AA3
A
55 71Right-handed alpha
Helix 4
AA4
A
71 76Right-handed alpha
Helix 5
AA5
A
85 91Right-handed alpha
Helix 6
AA6
A
102 109Right-handed 310
Helix 7
AA7
A
113 135Right-handed alpha
Helix 8
AA8
A
136 171Right-handed alpha
Helix 9
AA9
A
217 221Right-handed 310
Helix 10
AB1
A
239 249Right-handed alpha
Helix 11
AB2
A
254 258Right-handed 310
Helix 12
AB3
A
259 270Right-handed alpha
Helix 13
AB4
A
306 317Right-handed alpha
Helix 14
AB5
A
323 332Right-handed alpha
Helix 15
AB6
A
340 344Right-handed 310
Helix 16
AB7
A
380 385Right-handed 310
Helix 17
AB8
A
386 390Right-handed 310
Helix 18
AB9
A
404 408Right-handed 310
Helix 19
AC1
B
18 38Right-handed alpha
Helix 20
AC2
B
41 46Right-handed 310
Helix 21
AC3
B
55 71Right-handed alpha
Helix 22
AC4
B
71 76Right-handed alpha
Helix 23
AC5
B
85 91Right-handed alpha
Helix 24
AC6
B
102 109Right-handed 310
Helix 25
AC7
B
113 135Right-handed alpha
Helix 26
AC8
B
136 171Right-handed alpha
Helix 27
AC9
B
217 221Right-handed 310
Helix 28
AD1
B
239 249Right-handed alpha
Helix 29
AD2
B
250 258Right-handed 310
Helix 30
AD3
B
259 270Right-handed alpha
Helix 31
AD4
B
306 317Right-handed alpha
Helix 32
AD5
B
323 332Right-handed alpha
Helix 33
AD6
B
340 344Right-handed 310
Helix 34
AD7
B
380 385Right-handed 310
Helix 35
AD8
B
386 390Right-handed 310
Helix 36
AD9
B
404 408Right-handed 310
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There are 8 sheets in PDB entry 6QKJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 201first strand
Strand 2
A
231 234anti-parallel
Strand 3
A
430 432anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 208first strand
Strand 2
A
224 228anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 279first strand
Strand 2
A
285 289anti-parallel
Strand 3
A
292 295anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
414 416first strand
Strand 2
A
394 397anti-parallel
Strand 3
A
362 368anti-parallel
Strand 4
A
425 426parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 201first strand
Strand 2
B
231 234anti-parallel
Strand 3
B
430 432anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 208first strand
Strand 2
B
224 228anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
277 279first strand
Strand 2
B
285 289anti-parallel
Strand 3
B
292 295anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
414 416first strand
Strand 2
B
394 397anti-parallel
Strand 3
B
362 368anti-parallel
Strand 4
B
425 426parallel
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