Analysis of interatomic Contacts of Structural Units in PDB entry:
6QKL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6QKL entry

There are 11 chains in PDB entry 6QKL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
N	A 1221	C 3480
A	SER 2	GLY 389
B	MET 1	LEU 185
E	SER 9	VAL 136
F	GLY 2	ASN 217
G	THR 3	TYR 55
H	ILE 1	LEU 51
I	MET 1	LEU 224
J	MET 1	GLU 250
C	MET 1	GLU 205
D	MET 1	LYS 166

There are 45 helices in PDB entry 6QKL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	113	117	Right-handed 310
Helix 2	AA2	A	134	138	Right-handed 310
Helix 3	AA3	A	143	158	Right-handed alpha
Helix 4	AA4	A	190	200	Right-handed alpha
Helix 5	AA5	A	207	212	Right-handed alpha
Helix 6	AA6	A	380	388	Right-handed alpha
Helix 7	AA7	B	64	84	Right-handed alpha
Helix 8	AA8	B	148	162	Right-handed alpha
Helix 9	AA9	E	66	70	Right-handed 310
Helix 10	AB1	E	125	130	Right-handed alpha
Helix 11	AB2	F	62	80	Right-handed alpha
Helix 12	AB3	F	107	112	Right-handed alpha
Helix 13	AB4	F	142	145	Right-handed 310
Helix 14	AB5	F	146	156	Right-handed alpha
Helix 15	AB6	F	177	187	Right-handed alpha
Helix 16	AB7	F	212	216	Right-handed 310
Helix 17	AB8	G	33	42	Right-handed alpha
Helix 18	AB9	H	2	14	Right-handed alpha
Helix 19	AC1	I	12	16	Right-handed alpha
Helix 20	AC2	I	33	40	Right-handed alpha
Helix 21	AC3	I	77	88	Right-handed alpha
Helix 22	AC4	I	123	133	Right-handed alpha
Helix 23	AC5	I	166	176	Right-handed alpha
Helix 24	AC6	I	211	223	Right-handed alpha
Helix 25	AC7	J	79	90	Right-handed alpha
Helix 26	AC8	J	98	111	Right-handed alpha
Helix 27	AC9	J	113	117	Right-handed 310
Helix 28	AD1	J	130	139	Right-handed alpha
Helix 29	AD2	J	149	165	Right-handed alpha
Helix 30	AD3	J	180	182	Right-handed 310
Helix 31	AD4	J	183	191	Right-handed alpha
Helix 32	AD5	J	217	222	Right-handed alpha
Helix 33	AD6	J	223	228	Right-handed alpha
Helix 34	AD7	C	12	17	Right-handed alpha
Helix 35	AD8	C	18	22	Right-handed 310
Helix 36	AD9	C	36	41	Right-handed alpha
Helix 37	AE1	C	45	49	Right-handed alpha
Helix 38	AE2	C	58	63	Right-handed 310
Helix 39	AE3	C	95	99	Right-handed 310
Helix 40	AE4	C	133	138	Right-handed alpha
Helix 41	AE5	C	170	177	Right-handed alpha
Helix 42	AE6	D	31	36	Right-handed alpha
Helix 43	AE7	D	39	51	Right-handed alpha
Helix 44	AE8	D	79	84	Right-handed alpha
Helix 45	AE9	D	92	96	Right-handed 310

There are 30 sheets in PDB entry 6QKL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	364	367	first strand
Strand 2	A	48	59	anti-parallel
Strand 3	A	343	348	anti-parallel
Strand 4	A	217	223	anti-parallel
Strand 5	A	277	289	anti-parallel
Strand 6	A	329	333	anti-parallel
Strand 7	A	71	80	anti-parallel
Strand 8	A	48	59	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	101	first strand
Strand 2	A	84	93	anti-parallel
Strand 3	A	160	166	anti-parallel
Strand 4	A	181	185	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	106	first strand
Strand 2	A	84	93	anti-parallel
Strand 3	A	205	206	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	230	first strand
Strand 2	A	271	273	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	5	first strand
Strand 2	B	58	60	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	11	first strand
Strand 2	B	52	53	anti-parallel
Strand 3	B	47	48	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	18	first strand
Strand 2	B	24	28	anti-parallel
Strand 3	B	33	37	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	134	first strand
Strand 2	B	141	145	anti-parallel
Strand 3	B	87	93	anti-parallel
Strand 4	B	176	183	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	103	first strand
Strand 2	B	110	113	anti-parallel
Strand 3	B	122	124	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	21	25	first strand
Strand 2	E	34	39	anti-parallel
Strand 3	E	57	61	anti-parallel
Strand 4	E	74	80	anti-parallel
Strand 5	E	99	103	anti-parallel
Strand 6	E	21	25	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	85	86	first strand
Strand 2	E	92	93	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	116	118	first strand
Strand 2	E	134	136	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	36	37	first strand
Strand 2	F	85	87	anti-parallel
Strand 3	F	133	140	anti-parallel
Strand 4	F	48	54	anti-parallel
Strand 5	F	163	164	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	36	37	first strand
Strand 2	F	85	87	anti-parallel
Strand 3	F	133	140	anti-parallel
Strand 4	F	48	54	anti-parallel
Strand 5	F	167	168	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	58	61	first strand
Strand 2	F	121	129	anti-parallel
Strand 3	F	95	99	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	5	first strand
Strand 2	G	12	13	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	19	22	first strand
Strand 2	G	28	31	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	17	19	first strand
Strand 2	H	44	46	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	2	5	first strand
Strand 2	I	204	207	parallel
Strand 3	I	197	199	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	17	18	first strand
Strand 2	I	25	26	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	71	72	first strand
Strand 2	I	95	96	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	114	116	first strand
Strand 2	I	136	138	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	153	154	first strand
Strand 2	I	159	160	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	25	30	first strand
Strand 2	J	17	22	anti-parallel
Strand 3	J	92	94	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	57	59	first strand
Strand 2	J	64	65	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	195	200	first strand
Strand 2	J	207	214	anti-parallel
Strand 3	J	171	178	anti-parallel
Strand 4	J	234	239	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	27	first strand
Strand 2	C	191	193	anti-parallel
Strand 3	C	197	199	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	52	first strand
Strand 2	C	88	90	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	106	107	first strand
Strand 2	C	183	184	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	146	first strand
Strand 2	C	151	152	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6QKL

Analysis of interatomic Contacts of Structural Units in PDB entry:
6QKL