Analysis of interatomic Contacts of Structural Units in PDB entry:
6QKV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QKV entry

There are 2 chains in PDB entry 6QKV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4ASP 158
B
 SER 4ASP 158
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 6QKV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 31Right-handed alpha
Helix 2
AA2
A
55 60Right-handed alpha
Helix 3
AA3
A
67 75Right-handed alpha
Helix 4
AA4
A
92 94Right-handed 310
Helix 5
AA5
A
112 118Right-handed alpha
Helix 6
AA6
A
119 122Right-handed 310
Helix 7
AA7
A
137 153Right-handed alpha
Helix 8
AA8
B
16 31Right-handed alpha
Helix 9
AA9
B
67 75Right-handed alpha
Helix 10
AB1
B
92 94Right-handed 310
Helix 11
AB2
B
112 117Right-handed alpha
Helix 12
AB3
B
118 119Right-handed 310
Helix 13
AB4
B
120 122Right-handed 310
Helix 14
AB5
B
137 153Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 6QKV. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 65first strand
Strand 2
A
33 37parallel
Strand 3
A
8 12parallel
Strand 4
A
101 104parallel
Strand 5
A
80 83parallel
Strand 6
A
124 126parallel
Strand 7
A
89 90parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 65first strand
Strand 2
B
32 37parallel
Strand 3
B
7 12parallel
Strand 4
B
101 104parallel
Strand 5
B
80 83parallel
Strand 6
B
124 126parallel
Strand 7
B
89 90parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il