Analysis of interatomic Contacts of Structural Units in PDB entry:
6QL4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QL4 entry

There are 2 chains in PDB entry 6QL4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 223GLY 910
B
 ASP 224LYS 873
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 6QL4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
224 245Right-handed alpha
Helix 2
AA2
A
260 274Right-handed alpha
Helix 3
AA3
A
317 332Right-handed alpha
Helix 4
AA4
A
376 389Right-handed alpha
Helix 5
AA5
A
406 416Right-handed alpha
Helix 6
AA6
A
428 432Right-handed 310
Helix 7
AA7
A
433 442Right-handed alpha
Helix 8
AA8
A
472 485Right-handed alpha
Helix 9
AA9
A
501 544Right-handed alpha
Helix 10
AB1
A
549 573Right-handed alpha
Helix 11
AB2
A
574 597Right-handed alpha
Helix 12
AB3
A
625 641Right-handed alpha
Helix 13
AB4
A
643 667Right-handed alpha
Helix 14
AB5
A
672 708Right-handed alpha
Helix 15
AB6
A
712 746Right-handed alpha
Helix 16
AB7
A
747 763Right-handed alpha
Helix 17
AB8
A
781 809Right-handed alpha
Helix 18
AB9
A
810 813Right-handed 310
Helix 19
AC1
A
817 820Right-handed 310
Helix 20
AC2
A
821 868Right-handed alpha
Helix 21
AC3
A
869 878Right-handed alpha
Helix 22
AC4
A
878 908Right-handed alpha
Helix 23
AC5
B
225 244Right-handed alpha
Helix 24
AC6
B
260 275Right-handed alpha
Helix 25
AC7
B
317 332Right-handed alpha
Helix 26
AC8
B
376 389Right-handed alpha
Helix 27
AC9
B
406 416Right-handed alpha
Helix 28
AD1
B
428 432Right-handed 310
Helix 29
AD2
B
433 442Right-handed alpha
Helix 30
AD3
B
472 485Right-handed alpha
Helix 31
AD4
B
501 542Right-handed alpha
Helix 32
AD5
B
543 546Right-handed 310
Helix 33
AD6
B
549 573Right-handed alpha
Helix 34
AD7
B
574 598Right-handed alpha
Helix 35
AD8
B
614 618Right-handed 310
Helix 36
AD9
B
625 641Right-handed alpha
Helix 37
AE1
B
643 667Right-handed alpha
Helix 38
AE2
B
672 708Right-handed alpha
Helix 39
AE3
B
712 746Right-handed alpha
Helix 40
AE4
B
747 763Right-handed alpha
Helix 41
AE5
B
780 809Right-handed alpha
Helix 42
AE6
B
810 813Right-handed 310
Helix 43
AE7
B
817 820Right-handed 310
Helix 44
AE8
B
821 845Right-handed alpha
Helix 45
AE9
B
845 869Right-handed alpha
Helix 46
AF1
B
869 878Right-handed alpha
Helix 47
AF2
B
878 908Right-handed alpha
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There are 3 sheets in PDB entry 6QL4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 315first strand
Strand 2
A
304 306anti-parallel
Strand 3
A
343 349anti-parallel
Strand 4
A
290 296parallel
Strand 5
A
356 359anti-parallel
Strand 6
A
255 258parallel
Strand 7
A
392 398parallel
Strand 8
A
422 427parallel
Strand 9
A
452 454parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
775 776first strand
Strand 2
A
779 780anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
314 315first strand
Strand 2
B
304 306anti-parallel
Strand 3
B
343 349anti-parallel
Strand 4
B
290 296parallel
Strand 5
B
356 359anti-parallel
Strand 6
B
255 258parallel
Strand 7
B
392 398parallel
Strand 8
B
422 427parallel
Strand 9
B
452 454parallel
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