Analysis of interatomic Contacts of Structural Units in PDB entry:
6QLD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6QLD entry

There are 22 chains in PDB entry 6QLD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	LEU 284	TYR 305
G	T 2	C 125
H	SER 4	PRO 136
I	ASN 321	TYR 728
J	G -125	A -2
K	VAL 7	MET 128
L	PRO 2	PHE 242
N	LEU 5	GLN 451
O	SER 153	ALA 364
P	GLN 97	MET 366
Q	SER 161	VAL 391
U	SER 131	LEU 320
Y	THR 2	LYS 238
Z	SER 3	ASN 153
a	LEU 137	GLY 226
b	ASP 25	GLY 103
d	ARG 37	THR 129
e	VAL 112	GLY 226
f	ASP 25	GLY 103
g	GLN 17	LYS 121
h	ALA 36	THR 129
i	GLN 17	LEU 118

There are124 helices in PDB entry 6QLD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	5	38	Right-handed alpha
Helix 2	AA2	H	46	73	Right-handed alpha
Helix 3	AA3	H	83	93	Right-handed alpha
Helix 4	AA4	H	96	135	Right-handed alpha
Helix 5	AA5	I	334	338	Right-handed 310
Helix 6	AA6	I	339	349	Right-handed alpha
Helix 7	AA7	I	354	369	Right-handed alpha
Helix 8	AA8	I	378	387	Right-handed alpha
Helix 9	AA9	I	389	399	Right-handed alpha
Helix 10	AB1	I	402	407	Right-handed alpha
Helix 11	AB2	I	409	421	Right-handed alpha
Helix 12	AB3	I	432	450	Right-handed alpha
Helix 13	AB4	I	457	473	Right-handed alpha
Helix 14	AB5	I	479	493	Right-handed alpha
Helix 15	AB6	I	506	524	Right-handed alpha
Helix 16	AB7	I	538	548	Right-handed alpha
Helix 17	AB8	I	550	569	Right-handed alpha
Helix 18	AB9	I	577	592	Right-handed alpha
Helix 19	AC1	I	607	619	Right-handed alpha
Helix 20	AC2	I	639	651	Right-handed alpha
Helix 21	AC3	I	666	675	Right-handed alpha
Helix 22	AC4	I	695	707	Right-handed alpha
Helix 23	AC5	I	712	721	Right-handed alpha
Helix 24	AC6	I	722	726	Right-handed 310
Helix 25	AC7	K	8	40	Right-handed alpha
Helix 26	AC8	K	51	58	Right-handed alpha
Helix 27	AC9	K	70	127	Right-handed alpha
Helix 28	AD1	L	19	28	Right-handed alpha
Helix 29	AD2	L	94	106	Right-handed alpha
Helix 30	AD3	L	118	128	Right-handed alpha
Helix 31	AD4	L	153	157	Right-handed 310
Helix 32	AD5	L	166	178	Right-handed alpha
Helix 33	AD6	L	182	187	Right-handed alpha
Helix 34	AD7	L	187	196	Right-handed alpha
Helix 35	AD8	L	229	240	Right-handed alpha
Helix 36	AD9	N	16	25	Right-handed alpha
Helix 37	AE1	N	28	43	Right-handed alpha
Helix 38	AE2	N	54	64	Right-handed alpha
Helix 39	AE3	N	67	77	Right-handed alpha
Helix 40	AE4	N	85	100	Right-handed alpha
Helix 41	AE5	N	124	137	Right-handed alpha
Helix 42	AE6	N	218	232	Right-handed alpha
Helix 43	AE7	N	250	259	Right-handed alpha
Helix 44	AE8	N	261	265	Right-handed 310
Helix 45	AE9	N	268	273	Right-handed 310
Helix 46	AF1	N	289	294	Right-handed alpha
Helix 47	AF2	N	318	334	Right-handed alpha
Helix 48	AF3	N	408	419	Right-handed alpha
Helix 49	AF4	N	423	427	Right-handed 310
Helix 50	AF5	N	428	433	Right-handed alpha
Helix 51	AF6	O	154	172	Right-handed alpha
Helix 52	AF7	O	246	253	Right-handed alpha
Helix 53	AF8	O	254	257	Right-handed 310
Helix 54	AF9	O	260	291	Right-handed alpha
Helix 55	AG1	O	340	348	Right-handed alpha
Helix 56	AG2	O	352	363	Right-handed alpha
Helix 57	AG3	P	98	110	Right-handed alpha
Helix 58	AG4	P	133	140	Right-handed alpha
Helix 59	AG5	P	149	159	Right-handed alpha
Helix 60	AG6	P	224	232	Right-handed alpha
Helix 61	AG7	P	236	266	Right-handed alpha
Helix 62	AG8	P	333	348	Right-handed alpha
Helix 63	AG9	P	352	363	Right-handed alpha
Helix 64	AH1	Q	162	184	Right-handed alpha
Helix 65	AH2	Q	197	219	Right-handed alpha
Helix 66	AH3	Q	234	293	Right-handed alpha
Helix 67	AH4	Q	322	333	Right-handed alpha
Helix 68	AH5	Q	349	357	Right-handed alpha
Helix 69	AH6	Q	358	382	Right-handed alpha
Helix 70	AH7	Q	382	391	Right-handed alpha
Helix 71	AH8	U	132	155	Right-handed alpha
Helix 72	AH9	U	167	231	Right-handed alpha
Helix 73	AI1	U	233	265	Right-handed alpha
Helix 74	AI2	U	288	299	Right-handed alpha
Helix 75	AI3	U	305	318	Right-handed alpha
Helix 76	AI4	Y	3	16	Right-handed alpha
Helix 77	AI5	Y	16	22	Right-handed alpha
Helix 78	AI6	Y	36	49	Right-handed alpha
Helix 79	AI7	Y	57	83	Right-handed alpha
Helix 80	AI8	Y	94	103	Right-handed alpha
Helix 81	AI9	Y	109	118	Right-handed alpha
Helix 82	AJ1	Y	137	186	Right-handed alpha
Helix 83	AJ2	Y	189	196	Right-handed alpha
Helix 84	AJ3	Y	196	219	Right-handed alpha
Helix 85	AJ4	Y	223	238	Right-handed alpha
Helix 86	AJ5	Z	4	14	Right-handed alpha
Helix 87	AJ6	Z	19	23	Right-handed 310
Helix 88	AJ7	Z	38	43	Right-handed alpha
Helix 89	AJ8	Z	43	82	Right-handed alpha
Helix 90	AJ9	Z	88	124	Right-handed alpha
Helix 91	AK1	Z	131	152	Right-handed alpha
Helix 92	AK2	a	138	146	Right-handed alpha
Helix 93	AK3	a	155	170	Right-handed alpha
Helix 94	AK4	a	179	208	Right-handed alpha
Helix 95	AK5	a	216	221	Right-handed alpha
Helix 96	AK6	a	222	225	Right-handed 310
Helix 97	AK7	b	31	43	Right-handed alpha
Helix 98	AK8	b	49	77	Right-handed alpha
Helix 99	AK9	b	83	95	Right-handed alpha
Helix 100	AL1	d	41	53	Right-handed alpha
Helix 101	AL2	d	59	88	Right-handed alpha
Helix 102	AL3	d	94	106	Right-handed alpha
Helix 103	AL4	d	107	128	Right-handed alpha
Helix 104	AL5	e	113	128	Right-handed alpha
Helix 105	AL6	e	139	146	Right-handed alpha
Helix 106	AL7	e	154	167	Right-handed alpha
Helix 107	AL8	e	179	208	Right-handed alpha
Helix 108	AL9	e	216	224	Right-handed alpha
Helix 109	AM1	f	26	30	Right-handed 310
Helix 110	AM2	f	31	42	Right-handed alpha
Helix 111	AM3	f	50	77	Right-handed alpha
Helix 112	AM4	f	83	94	Right-handed alpha
Helix 113	AM5	g	28	40	Right-handed alpha
Helix 114	AM6	g	47	75	Right-handed alpha
Helix 115	AM7	g	81	90	Right-handed alpha
Helix 116	AM8	g	92	99	Right-handed alpha
Helix 117	AM9	h	41	53	Right-handed alpha
Helix 118	AN1	h	59	88	Right-handed alpha
Helix 119	AN2	h	94	106	Right-handed alpha
Helix 120	AN3	h	107	126	Right-handed alpha
Helix 121	AN4	i	28	38	Right-handed alpha
Helix 122	AN5	i	48	74	Right-handed alpha
Helix 123	AN6	i	81	91	Right-handed alpha
Helix 124	AN7	i	92	100	Right-handed alpha

There are 15 sheets in PDB entry 6QLD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	73	76	first strand
Strand 2	L	85	89	anti-parallel
Strand 3	L	3	10	anti-parallel
Strand 4	L	220	223	anti-parallel
Strand 5	L	214	216	anti-parallel
Strand 6	L	208	209	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	33	36	first strand
Strand 2	L	55	58	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	130	132	first strand
Strand 2	L	138	140	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	162	164	first strand
Strand 2	N	396	403	anti-parallel
Strand 3	N	388	393	anti-parallel
Strand 4	N	441	443	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	106	110	first strand
Strand 2	N	210	214	anti-parallel
Strand 3	N	200	205	anti-parallel
Strand 4	N	154	163	anti-parallel
Strand 5	N	142	148	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	106	110	first strand
Strand 2	N	210	214	anti-parallel
Strand 3	N	200	205	anti-parallel
Strand 4	N	154	163	anti-parallel
Strand 5	N	195	196	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	112	113	first strand
Strand 2	N	117	118	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	175	180	first strand
Strand 2	O	201	206	anti-parallel
Strand 3	O	220	226	anti-parallel
Strand 4	O	233	235	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	305	309	first strand
Strand 2	O	314	320	anti-parallel
Strand 3	O	323	330	anti-parallel
Strand 4	O	350	351	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	165	175	first strand
Strand 2	P	180	189	anti-parallel
Strand 3	P	197	205	anti-parallel
Strand 4	P	212	220	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	270	273	first strand
Strand 2	P	279	284	anti-parallel
Strand 3	P	294	303	anti-parallel
Strand 4	P	318	326	anti-parallel
Strand 5	Q	334	336	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	97	99	first strand
Strand 2	g	102	104	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	57	58	first strand
Strand 2	i	79	80	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	92	93	first strand
Strand 2	i	44	45	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	177	178	first strand
Strand 2	f	81	82	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6QLD

Analysis of interatomic Contacts of Structural Units in PDB entry:
6QLD