Analysis of interatomic Contacts of Structural Units in PDB entry:
6QLE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6QLE entry

There are 11 chains in PDB entry 6QLE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	SER 4	PRO 136
I	UNK 321	TYR 728
K	VAL 7	MET 128
L	PRO 2	PHE 242
N	LEU 5	GLN 451
O	SER 153	ALA 364
P	GLN 97	MET 366
Q	UNK 125	VAL 391
U	UNK 131	GLN 321
Y	THR 2	LYS 238
Z	SER 3	ASN 153

There are 92 helices in PDB entry 6QLE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	5	39	Right-handed alpha
Helix 2	AA2	H	46	73	Right-handed alpha
Helix 3	AA3	H	83	94	Right-handed alpha
Helix 4	AA4	H	96	135	Right-handed alpha
Helix 5	AA5	I	323	328	Right-handed alpha
Helix 6	AA6	I	335	339	Right-handed 310
Helix 7	AA7	I	340	350	Right-handed alpha
Helix 8	AA8	I	354	369	Right-handed alpha
Helix 9	AA9	I	374	377	Right-handed 310
Helix 10	AB1	I	378	387	Right-handed alpha
Helix 11	AB2	I	389	401	Right-handed alpha
Helix 12	AB3	I	409	421	Right-handed alpha
Helix 13	AB4	I	422	424	Right-handed 310
Helix 14	AB5	I	431	448	Right-handed alpha
Helix 15	AB6	I	457	473	Right-handed alpha
Helix 16	AB7	I	478	493	Right-handed alpha
Helix 17	AB8	I	506	524	Right-handed alpha
Helix 18	AB9	I	538	548	Right-handed alpha
Helix 19	AC1	I	550	569	Right-handed alpha
Helix 20	AC2	I	576	592	Right-handed alpha
Helix 21	AC3	I	607	619	Right-handed alpha
Helix 22	AC4	I	639	653	Right-handed alpha
Helix 23	AC5	I	666	675	Right-handed alpha
Helix 24	AC6	I	693	707	Right-handed alpha
Helix 25	AC7	I	712	721	Right-handed alpha
Helix 26	AC8	I	722	726	Right-handed 310
Helix 27	AC9	K	8	40	Right-handed alpha
Helix 28	AD1	K	51	59	Right-handed alpha
Helix 29	AD2	K	70	128	Right-handed alpha
Helix 30	AD3	L	19	28	Right-handed alpha
Helix 31	AD4	L	94	108	Right-handed alpha
Helix 32	AD5	L	117	127	Right-handed alpha
Helix 33	AD6	L	153	157	Right-handed 310
Helix 34	AD7	L	166	178	Right-handed alpha
Helix 35	AD8	L	182	187	Right-handed alpha
Helix 36	AD9	L	188	197	Right-handed alpha
Helix 37	AE1	L	229	240	Right-handed alpha
Helix 38	AE2	N	16	25	Right-handed alpha
Helix 39	AE3	N	28	43	Right-handed alpha
Helix 40	AE4	N	55	60	Right-handed alpha
Helix 41	AE5	N	60	65	Right-handed alpha
Helix 42	AE6	N	67	77	Right-handed alpha
Helix 43	AE7	N	85	100	Right-handed alpha
Helix 44	AE8	N	101	104	Right-handed 310
Helix 45	AE9	N	126	137	Right-handed alpha
Helix 46	AF1	N	218	232	Right-handed alpha
Helix 47	AF2	N	250	259	Right-handed alpha
Helix 48	AF3	N	261	265	Right-handed 310
Helix 49	AF4	N	289	294	Right-handed alpha
Helix 50	AF5	N	318	334	Right-handed alpha
Helix 51	AF6	N	408	419	Right-handed alpha
Helix 52	AF7	N	428	433	Right-handed alpha
Helix 53	AF8	O	154	172	Right-handed alpha
Helix 54	AF9	O	245	253	Right-handed alpha
Helix 55	AG1	O	254	257	Right-handed 310
Helix 56	AG2	O	260	291	Right-handed alpha
Helix 57	AG3	O	340	349	Right-handed alpha
Helix 58	AG4	O	352	359	Right-handed alpha
Helix 59	AG5	P	98	109	Right-handed alpha
Helix 60	AG6	P	133	140	Right-handed alpha
Helix 61	AG7	P	149	159	Right-handed alpha
Helix 62	AG8	P	230	234	Right-handed 310
Helix 63	AG9	P	236	264	Right-handed alpha
Helix 64	AH1	P	333	348	Right-handed alpha
Helix 65	AH2	P	353	363	Right-handed alpha
Helix 66	AH3	Q	126	137	Right-handed alpha
Helix 67	AH4	Q	161	187	Right-handed alpha
Helix 68	AH5	Q	193	217	Right-handed alpha
Helix 69	AH6	Q	233	291	Right-handed alpha
Helix 70	AH7	Q	323	332	Right-handed alpha
Helix 71	AH8	Q	349	357	Right-handed alpha
Helix 72	AH9	Q	358	382	Right-handed alpha
Helix 73	AI1	Q	382	387	Right-handed alpha
Helix 74	AI2	U	132	156	Right-handed alpha
Helix 75	AI3	U	167	231	Right-handed alpha
Helix 76	AI4	U	233	265	Right-handed alpha
Helix 77	AI5	U	288	299	Right-handed alpha
Helix 78	AI6	U	305	321	Right-handed alpha
Helix 79	AI7	Y	3	16	Right-handed alpha
Helix 80	AI8	Y	26	31	Right-handed 310
Helix 81	AI9	Y	36	49	Right-handed alpha
Helix 82	AJ1	Y	57	82	Right-handed alpha
Helix 83	AJ2	Y	94	102	Right-handed alpha
Helix 84	AJ3	Y	109	118	Right-handed alpha
Helix 85	AJ4	Y	137	186	Right-handed alpha
Helix 86	AJ5	Y	189	217	Right-handed alpha
Helix 87	AJ6	Y	223	237	Right-handed alpha
Helix 88	AJ7	Z	4	14	Right-handed alpha
Helix 89	AJ8	Z	15	19	Right-handed 310
Helix 90	AJ9	Z	37	83	Right-handed alpha
Helix 91	AK1	Z	88	124	Right-handed alpha
Helix 92	AK2	Z	134	152	Right-handed alpha

There are 13 sheets in PDB entry 6QLE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	73	76	first strand
Strand 2	L	85	89	anti-parallel
Strand 3	L	5	10	anti-parallel
Strand 4	L	220	222	anti-parallel
Strand 5	L	215	216	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	31	33	first strand
Strand 2	L	58	60	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	38	39	first strand
Strand 2	L	52	53	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	130	132	first strand
Strand 2	L	138	140	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	141	148	first strand
Strand 2	N	154	163	anti-parallel
Strand 3	N	195	196	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	141	148	first strand
Strand 2	N	154	163	anti-parallel
Strand 3	N	200	205	anti-parallel
Strand 4	N	210	214	anti-parallel
Strand 5	N	106	113	anti-parallel
Strand 6	N	238	242	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	295	298	first strand
Strand 2	P	125	128	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	397	400	first strand
Strand 2	N	388	392	anti-parallel
Strand 3	N	440	443	parallel
Strand 4	N	446	449	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	175	180	first strand
Strand 2	O	201	206	anti-parallel
Strand 3	O	220	226	anti-parallel
Strand 4	O	233	238	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	186	188	first strand
Strand 2	O	195	197	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	305	309	first strand
Strand 2	O	314	320	anti-parallel
Strand 3	O	323	330	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	168	172	first strand
Strand 2	P	182	189	anti-parallel
Strand 3	P	197	204	anti-parallel
Strand 4	P	215	220	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	270	272	first strand
Strand 2	P	279	284	anti-parallel
Strand 3	P	294	303	anti-parallel
Strand 4	P	318	326	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6QLE

Analysis of interatomic Contacts of Structural Units in PDB entry:
6QLE