Analysis of interatomic Contacts of Structural Units in PDB entry:
6QLF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6QLF entry

There are 8 chains in PDB entry 6QLF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	PRO 2	PHE 242
N	LEU 5	GLN 451
O	SER 153	ALA 364
P	ARG 124	MET 366
Q	SER 161	VAL 391
U	SER 131	LEU 320
Y	THR 2	LYS 238
Z	SER 3	ASN 153

There are 66 helices in PDB entry 6QLF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	L	19	28	Right-handed alpha
Helix 2	AA2	L	95	108	Right-handed alpha
Helix 3	AA3	L	117	128	Right-handed alpha
Helix 4	AA4	L	153	157	Right-handed 310
Helix 5	AA5	L	166	178	Right-handed alpha
Helix 6	AA6	L	182	187	Right-handed alpha
Helix 7	AA7	L	187	197	Right-handed alpha
Helix 8	AA8	L	229	240	Right-handed alpha
Helix 9	AA9	N	16	25	Right-handed alpha
Helix 10	AB1	N	28	43	Right-handed alpha
Helix 11	AB2	N	55	65	Right-handed alpha
Helix 12	AB3	N	67	77	Right-handed alpha
Helix 13	AB4	N	85	100	Right-handed alpha
Helix 14	AB5	N	101	104	Right-handed 310
Helix 15	AB6	N	126	138	Right-handed alpha
Helix 16	AB7	N	218	232	Right-handed alpha
Helix 17	AB8	N	250	259	Right-handed alpha
Helix 18	AB9	N	261	265	Right-handed 310
Helix 19	AC1	N	268	273	Right-handed 310
Helix 20	AC2	N	289	294	Right-handed alpha
Helix 21	AC3	N	318	334	Right-handed alpha
Helix 22	AC4	N	408	419	Right-handed alpha
Helix 23	AC5	N	428	433	Right-handed alpha
Helix 24	AC6	O	155	172	Right-handed alpha
Helix 25	AC7	O	245	253	Right-handed alpha
Helix 26	AC8	O	254	257	Right-handed 310
Helix 27	AC9	O	260	291	Right-handed alpha
Helix 28	AD1	O	340	349	Right-handed alpha
Helix 29	AD2	O	352	360	Right-handed alpha
Helix 30	AD3	P	133	140	Right-handed alpha
Helix 31	AD4	P	149	160	Right-handed alpha
Helix 32	AD5	P	226	231	Right-handed alpha
Helix 33	AD6	P	232	234	Right-handed 310
Helix 34	AD7	P	236	264	Right-handed alpha
Helix 35	AD8	P	333	348	Right-handed alpha
Helix 36	AD9	P	352	363	Right-handed alpha
Helix 37	AE1	Q	162	184	Right-handed alpha
Helix 38	AE2	Q	194	199	Right-handed alpha
Helix 39	AE3	Q	200	217	Right-handed alpha
Helix 40	AE4	Q	233	293	Right-handed alpha
Helix 41	AE5	Q	323	333	Right-handed alpha
Helix 42	AE6	Q	349	357	Right-handed alpha
Helix 43	AE7	Q	359	381	Right-handed alpha
Helix 44	AE8	Q	382	391	Right-handed alpha
Helix 45	AE9	U	132	156	Right-handed alpha
Helix 46	AF1	U	170	232	Right-handed alpha
Helix 47	AF2	U	233	265	Right-handed alpha
Helix 48	AF3	U	288	299	Right-handed alpha
Helix 49	AF4	U	305	318	Right-handed alpha
Helix 50	AF5	Y	3	16	Right-handed alpha
Helix 51	AF6	Y	28	32	Right-handed 310
Helix 52	AF7	Y	36	49	Right-handed alpha
Helix 53	AF8	Y	57	82	Right-handed alpha
Helix 54	AF9	Y	94	103	Right-handed alpha
Helix 55	AG1	Y	110	118	Right-handed alpha
Helix 56	AG2	Y	137	186	Right-handed alpha
Helix 57	AG3	Y	189	196	Right-handed alpha
Helix 58	AG4	Y	196	214	Right-handed alpha
Helix 59	AG5	Y	223	236	Right-handed alpha
Helix 60	AG6	Z	4	13	Right-handed alpha
Helix 61	AG7	Z	19	24	Right-handed alpha
Helix 62	AG8	Z	39	50	Right-handed alpha
Helix 63	AG9	Z	52	57	Right-handed alpha
Helix 64	AH1	Z	57	81	Right-handed alpha
Helix 65	AH2	Z	88	124	Right-handed alpha
Helix 66	AH3	Z	134	152	Right-handed alpha

There are 13 sheets in PDB entry 6QLF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	35	36	first strand
Strand 2	L	55	59	anti-parallel
Strand 3	L	72	77	anti-parallel
Strand 4	L	85	89	anti-parallel
Strand 5	L	3	10	anti-parallel
Strand 6	L	220	223	anti-parallel
Strand 7	L	214	216	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	130	131	first strand
Strand 2	L	139	140	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	161	164	first strand
Strand 2	L	146	149	anti-parallel
Strand 3	L	205	208	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	117	118	first strand
Strand 2	N	106	113	anti-parallel
Strand 3	N	210	214	anti-parallel
Strand 4	N	200	205	anti-parallel
Strand 5	N	154	163	anti-parallel
Strand 6	N	195	196	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	141	146	first strand
Strand 2	N	154	163	anti-parallel
Strand 3	N	200	205	anti-parallel
Strand 4	N	210	214	anti-parallel
Strand 5	N	106	113	anti-parallel
Strand 6	N	238	242	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	295	298	first strand
Strand 2	P	125	128	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	384	385	first strand
Strand 2	N	404	405	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	398	400	first strand
Strand 2	N	388	391	anti-parallel
Strand 3	N	440	443	parallel
Strand 4	N	446	449	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	175	180	first strand
Strand 2	O	201	206	anti-parallel
Strand 3	O	220	226	anti-parallel
Strand 4	O	233	238	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	186	188	first strand
Strand 2	O	195	197	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	305	309	first strand
Strand 2	O	314	320	anti-parallel
Strand 3	O	323	330	anti-parallel
Strand 4	Y	108	109	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	168	172	first strand
Strand 2	P	182	189	anti-parallel
Strand 3	P	197	204	anti-parallel
Strand 4	P	215	220	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	270	272	first strand
Strand 2	P	279	284	anti-parallel
Strand 3	P	294	303	anti-parallel
Strand 4	P	318	326	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6QLF

Analysis of interatomic Contacts of Structural Units in PDB entry:
6QLF