Analysis of interatomic Contacts of Structural Units in PDB entry:
6QLM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QLM entry

There are 2 chains in PDB entry 6QLM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 0MET 215
B
 ARG 0MET 215
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6QLM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 11Right-handed 310
Helix 2
AA2
A
24 43Right-handed alpha
Helix 3
AA3
A
49 57Right-handed alpha
Helix 4
AA4
A
61 65Right-handed 310
Helix 5
AA5
A
67 79Right-handed alpha
Helix 6
AA6
A
99 101Right-handed 310
Helix 7
AA7
A
117 128Right-handed alpha
Helix 8
AA8
A
139 144Right-handed alpha
Helix 9
AA9
A
202 206Right-handed 310
Helix 10
AB1
B
8 11Right-handed 310
Helix 11
AB2
B
24 43Right-handed alpha
Helix 12
AB3
B
49 57Right-handed alpha
Helix 13
AB4
B
61 65Right-handed 310
Helix 14
AB5
B
67 79Right-handed alpha
Helix 15
AB6
B
99 101Right-handed 310
Helix 16
AB7
B
117 128Right-handed alpha
Helix 17
AB8
B
139 144Right-handed alpha
Helix 18
AB9
B
202 206Right-handed 310
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There are 8 sheets in PDB entry 6QLM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
162 172anti-parallel
Strand 3
A
131 135anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
162 172anti-parallel
Strand 3
A
175 181anti-parallel
Strand 4
A
193 197anti-parallel
Strand 5
A
149 150parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 82first strand
Strand 2
A
103 105anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 112first strand
Strand 2
A
211 214anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 6first strand
Strand 2
B
162 172anti-parallel
Strand 3
B
131 135anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 6first strand
Strand 2
B
162 172anti-parallel
Strand 3
B
175 181anti-parallel
Strand 4
B
193 197anti-parallel
Strand 5
B
149 150parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 82first strand
Strand 2
B
103 105anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 112first strand
Strand 2
B
211 213anti-parallel
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