Analysis of interatomic Contacts of Structural Units in PDB entry:
6QLW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6QLW entry

There are 4 chains in PDB entry 6QLW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 0	MET 215
B	ARG 0	MET 215
C	ARG 0	MET 215
D	ARG 0	MET 215

There are 33 helices in PDB entry 6QLW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	43	Right-handed alpha
Helix 2	AA2	A	49	57	Right-handed alpha
Helix 3	AA3	A	61	65	Right-handed 310
Helix 4	AA4	A	67	79	Right-handed alpha
Helix 5	AA5	A	99	101	Right-handed 310
Helix 6	AA6	A	117	129	Right-handed alpha
Helix 7	AA7	A	139	144	Right-handed alpha
Helix 8	AA8	A	202	206	Right-handed 310
Helix 9	AA9	B	8	11	Right-handed 310
Helix 10	AB1	B	24	43	Right-handed alpha
Helix 11	AB2	B	49	57	Right-handed alpha
Helix 12	AB3	B	61	65	Right-handed 310
Helix 13	AB4	B	67	79	Right-handed alpha
Helix 14	AB5	B	99	101	Right-handed 310
Helix 15	AB6	B	117	129	Right-handed alpha
Helix 16	AB7	B	139	144	Right-handed alpha
Helix 17	AB8	B	202	206	Right-handed 310
Helix 18	AB9	C	24	43	Right-handed alpha
Helix 19	AC1	C	49	57	Right-handed alpha
Helix 20	AC2	C	61	65	Right-handed 310
Helix 21	AC3	C	67	79	Right-handed alpha
Helix 22	AC4	C	99	101	Right-handed 310
Helix 23	AC5	C	117	129	Right-handed alpha
Helix 24	AC6	C	139	144	Right-handed alpha
Helix 25	AC7	C	202	206	Right-handed 310
Helix 26	AC8	D	24	43	Right-handed alpha
Helix 27	AC9	D	49	57	Right-handed alpha
Helix 28	AD1	D	61	65	Right-handed 310
Helix 29	AD2	D	67	79	Right-handed alpha
Helix 30	AD3	D	99	101	Right-handed 310
Helix 31	AD4	D	117	129	Right-handed alpha
Helix 32	AD5	D	139	144	Right-handed alpha
Helix 33	AD6	D	202	206	Right-handed 310

There are 16 sheets in PDB entry 6QLW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	6	first strand
Strand 2	A	162	172	anti-parallel
Strand 3	A	131	135	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	6	first strand
Strand 2	A	162	172	anti-parallel
Strand 3	A	175	181	anti-parallel
Strand 4	A	193	197	anti-parallel
Strand 5	A	149	150	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	82	first strand
Strand 2	A	103	105	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	112	first strand
Strand 2	A	211	213	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	6	first strand
Strand 2	B	162	172	anti-parallel
Strand 3	B	131	135	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	6	first strand
Strand 2	B	162	172	anti-parallel
Strand 3	B	175	181	anti-parallel
Strand 4	B	193	197	anti-parallel
Strand 5	B	149	150	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	82	first strand
Strand 2	B	103	105	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	112	first strand
Strand 2	B	211	214	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	6	first strand
Strand 2	C	162	172	anti-parallel
Strand 3	C	131	135	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	6	first strand
Strand 2	C	162	172	anti-parallel
Strand 3	C	175	181	anti-parallel
Strand 4	C	193	197	anti-parallel
Strand 5	C	149	150	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	82	first strand
Strand 2	C	103	105	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	112	first strand
Strand 2	C	211	213	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	6	first strand
Strand 2	D	162	172	anti-parallel
Strand 3	D	131	135	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	6	first strand
Strand 2	D	162	172	anti-parallel
Strand 3	D	175	181	anti-parallel
Strand 4	D	193	197	anti-parallel
Strand 5	D	149	150	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	81	82	first strand
Strand 2	D	103	105	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	109	112	first strand
Strand 2	D	211	214	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6QLW

Analysis of interatomic Contacts of Structural Units in PDB entry:
6QLW