Analysis of interatomic Contacts of Structural Units in PDB entry:
6QM4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QM4 entry

There are 2 chains in PDB entry 6QM4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 15ALA 718
B
 GLU 15ALA 718
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 6QM4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 50Right-handed alpha
Helix 2
AA2
A
72 90Right-handed alpha
Helix 3
AA3
A
102 108Right-handed alpha
Helix 4
AA4
A
111 125Right-handed alpha
Helix 5
AA5
A
152 165Right-handed alpha
Helix 6
AA6
A
170 182Right-handed alpha
Helix 7
AA7
A
182 197Right-handed alpha
Helix 8
AA8
A
199 212Right-handed alpha
Helix 9
AA9
A
217 246Right-handed alpha
Helix 10
AB1
A
280 289Right-handed alpha
Helix 11
AB2
A
290 320Right-handed alpha
Helix 12
AB3
A
325 330Right-handed alpha
Helix 13
AB4
A
330 358Right-handed alpha
Helix 14
AB5
A
362 392Right-handed alpha
Helix 15
AB6
A
400 416Right-handed alpha
Helix 16
AB7
A
431 460Right-handed alpha
Helix 17
AB8
A
482 493Right-handed alpha
Helix 18
AB9
A
500 516Right-handed alpha
Helix 19
AC1
A
523 545Right-handed alpha
Helix 20
AC2
A
560 583Right-handed alpha
Helix 21
AC3
A
598 624Right-handed alpha
Helix 22
AC4
A
625 628Right-handed 310
Helix 23
AC5
A
629 650Right-handed alpha
Helix 24
AC6
A
666 684Right-handed alpha
Helix 25
AC7
A
690 696Right-handed alpha
Helix 26
AC8
A
700 718Right-handed alpha
Helix 27
AC9
B
32 50Right-handed alpha
Helix 28
AD1
B
72 90Right-handed alpha
Helix 29
AD2
B
102 108Right-handed alpha
Helix 30
AD3
B
111 125Right-handed alpha
Helix 31
AD4
B
152 165Right-handed alpha
Helix 32
AD5
B
170 182Right-handed alpha
Helix 33
AD6
B
182 197Right-handed alpha
Helix 34
AD7
B
199 212Right-handed alpha
Helix 35
AD8
B
217 246Right-handed alpha
Helix 36
AD9
B
280 289Right-handed alpha
Helix 37
AE1
B
290 320Right-handed alpha
Helix 38
AE2
B
325 330Right-handed alpha
Helix 39
AE3
B
330 358Right-handed alpha
Helix 40
AE4
B
362 392Right-handed alpha
Helix 41
AE5
B
400 416Right-handed alpha
Helix 42
AE6
B
431 460Right-handed alpha
Helix 43
AE7
B
482 493Right-handed alpha
Helix 44
AE8
B
500 516Right-handed alpha
Helix 45
AE9
B
523 545Right-handed alpha
Helix 46
AF1
B
560 583Right-handed alpha
Helix 47
AF2
B
598 624Right-handed alpha
Helix 48
AF3
B
625 628Right-handed 310
Helix 49
AF4
B
629 650Right-handed alpha
Helix 50
AF5
B
666 684Right-handed alpha
Helix 51
AF6
B
690 696Right-handed alpha
Helix 52
AF7
B
700 718Right-handed alpha
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There are 4 sheets in PDB entry 6QM4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 56first strand
Strand 2
A
66 70anti-parallel
Strand 3
A
22 24anti-parallel
Strand 4
A
147 149anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 266first strand
Strand 2
A
277 278anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 56first strand
Strand 2
B
66 70anti-parallel
Strand 3
B
22 24anti-parallel
Strand 4
B
147 149anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
265 266first strand
Strand 2
B
277 278anti-parallel
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