Analysis of interatomic Contacts of Structural Units in PDB entry:
6QM5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QM5 entry

There are 2 chains in PDB entry 6QM5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 15GLY 719
B
 GLU 15GLY 719
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 66 helices in PDB entry 6QM5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 49Right-handed alpha
Helix 2
AA2
A
72 89Right-handed alpha
Helix 3
AA3
A
103 108Right-handed alpha
Helix 4
AA4
A
111 124Right-handed alpha
Helix 5
AA5
A
135 139Right-handed 310
Helix 6
AA6
A
152 165Right-handed alpha
Helix 7
AA7
A
171 187Right-handed alpha
Helix 8
AA8
A
187 197Right-handed alpha
Helix 9
AA9
A
199 212Right-handed alpha
Helix 10
AB1
A
217 246Right-handed alpha
Helix 11
AB2
A
280 289Right-handed alpha
Helix 12
AB3
A
290 319Right-handed alpha
Helix 13
AB4
A
327 329Right-handed 310
Helix 14
AB5
A
330 356Right-handed alpha
Helix 15
AB6
A
376 392Right-handed alpha
Helix 16
AB7
A
396 399Right-handed 310
Helix 17
AB8
A
400 413Right-handed alpha
Helix 18
AB9
A
431 442Right-handed alpha
Helix 19
AC1
A
442 453Right-handed alpha
Helix 20
AC2
A
453 460Right-handed alpha
Helix 21
AC3
A
460 465Right-handed alpha
Helix 22
AC4
A
482 493Right-handed alpha
Helix 23
AC5
A
499 516Right-handed alpha
Helix 24
AC6
A
517 524Right-handed 310
Helix 25
AC7
A
525 545Right-handed alpha
Helix 26
AC8
A
561 572Right-handed alpha
Helix 27
AC9
A
574 583Right-handed alpha
Helix 28
AD1
A
584 587Right-handed 310
Helix 29
AD2
A
598 627Right-handed alpha
Helix 30
AD3
A
631 651Right-handed alpha
Helix 31
AD4
A
666 682Right-handed alpha
Helix 32
AD5
A
691 696Right-handed alpha
Helix 33
AD6
A
701 717Right-handed alpha
Helix 34
AD7
B
33 49Right-handed alpha
Helix 35
AD8
B
72 89Right-handed alpha
Helix 36
AD9
B
103 108Right-handed alpha
Helix 37
AE1
B
111 124Right-handed alpha
Helix 38
AE2
B
135 139Right-handed 310
Helix 39
AE3
B
152 165Right-handed alpha
Helix 40
AE4
B
171 187Right-handed alpha
Helix 41
AE5
B
187 197Right-handed alpha
Helix 42
AE6
B
199 212Right-handed alpha
Helix 43
AE7
B
217 246Right-handed alpha
Helix 44
AE8
B
280 289Right-handed alpha
Helix 45
AE9
B
290 319Right-handed alpha
Helix 46
AF1
B
327 329Right-handed 310
Helix 47
AF2
B
330 356Right-handed alpha
Helix 48
AF3
B
376 392Right-handed alpha
Helix 49
AF4
B
396 399Right-handed 310
Helix 50
AF5
B
400 413Right-handed alpha
Helix 51
AF6
B
431 442Right-handed alpha
Helix 52
AF7
B
442 453Right-handed alpha
Helix 53
AF8
B
453 460Right-handed alpha
Helix 54
AF9
B
460 465Right-handed alpha
Helix 55
AG1
B
482 493Right-handed alpha
Helix 56
AG2
B
499 516Right-handed alpha
Helix 57
AG3
B
517 524Right-handed 310
Helix 58
AG4
B
525 545Right-handed alpha
Helix 59
AG5
B
561 572Right-handed alpha
Helix 60
AG6
B
574 583Right-handed alpha
Helix 61
AG7
B
584 587Right-handed 310
Helix 62
AG8
B
598 627Right-handed alpha
Helix 63
AG9
B
631 651Right-handed alpha
Helix 64
AH1
B
666 682Right-handed alpha
Helix 65
AH2
B
691 696Right-handed alpha
Helix 66
AH3
B
701 717Right-handed alpha
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There are 4 sheets in PDB entry 6QM5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
66 70anti-parallel
Strand 3
A
22 24anti-parallel
Strand 4
A
147 149anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 268first strand
Strand 2
A
275 278anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 53first strand
Strand 2
B
66 70anti-parallel
Strand 3
B
22 24anti-parallel
Strand 4
B
147 149anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
265 268first strand
Strand 2
B
275 278anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il