Analysis of interatomic Contacts of Structural Units in PDB entry:
6QM9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QM9 entry

There are 2 chains in PDB entry 6QM9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 15GLY 719
B
 GLU 15GLY 719
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 6QM9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 48Right-handed alpha
Helix 2
AA2
A
72 90Right-handed alpha
Helix 3
AA3
A
103 108Right-handed alpha
Helix 4
AA4
A
111 124Right-handed alpha
Helix 5
AA5
A
135 139Right-handed 310
Helix 6
AA6
A
152 166Right-handed alpha
Helix 7
AA7
A
170 198Right-handed alpha
Helix 8
AA8
A
199 212Right-handed alpha
Helix 9
AA9
A
217 246Right-handed alpha
Helix 10
AB1
A
280 289Right-handed alpha
Helix 11
AB2
A
290 302Right-handed alpha
Helix 12
AB3
A
302 317Right-handed alpha
Helix 13
AB4
A
330 359Right-handed alpha
Helix 14
AB5
A
362 381Right-handed alpha
Helix 15
AB6
A
383 392Right-handed alpha
Helix 16
AB7
A
400 412Right-handed alpha
Helix 17
AB8
A
431 453Right-handed alpha
Helix 18
AB9
A
453 471Right-handed alpha
Helix 19
AC1
A
481 494Right-handed alpha
Helix 20
AC2
A
500 518Right-handed alpha
Helix 21
AC3
A
523 546Right-handed alpha
Helix 22
AC4
A
560 584Right-handed alpha
Helix 23
AC5
A
598 627Right-handed alpha
Helix 24
AC6
A
629 649Right-handed alpha
Helix 25
AC7
A
666 682Right-handed alpha
Helix 26
AC8
A
689 696Right-handed alpha
Helix 27
AC9
A
701 718Right-handed alpha
Helix 28
AD1
B
32 48Right-handed alpha
Helix 29
AD2
B
72 90Right-handed alpha
Helix 30
AD3
B
103 108Right-handed alpha
Helix 31
AD4
B
111 124Right-handed alpha
Helix 32
AD5
B
135 139Right-handed 310
Helix 33
AD6
B
152 166Right-handed alpha
Helix 34
AD7
B
170 198Right-handed alpha
Helix 35
AD8
B
199 212Right-handed alpha
Helix 36
AD9
B
217 246Right-handed alpha
Helix 37
AE1
B
280 289Right-handed alpha
Helix 38
AE2
B
290 302Right-handed alpha
Helix 39
AE3
B
302 317Right-handed alpha
Helix 40
AE4
B
330 359Right-handed alpha
Helix 41
AE5
B
362 381Right-handed alpha
Helix 42
AE6
B
383 392Right-handed alpha
Helix 43
AE7
B
400 412Right-handed alpha
Helix 44
AE8
B
431 453Right-handed alpha
Helix 45
AE9
B
453 471Right-handed alpha
Helix 46
AF1
B
481 494Right-handed alpha
Helix 47
AF2
B
500 518Right-handed alpha
Helix 48
AF3
B
523 546Right-handed alpha
Helix 49
AF4
B
560 584Right-handed alpha
Helix 50
AF5
B
598 627Right-handed alpha
Helix 51
AF6
B
629 649Right-handed alpha
Helix 52
AF7
B
666 682Right-handed alpha
Helix 53
AF8
B
689 696Right-handed alpha
Helix 54
AF9
B
701 718Right-handed alpha
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There are 4 sheets in PDB entry 6QM9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 58first strand
Strand 2
A
64 70anti-parallel
Strand 3
A
22 24anti-parallel
Strand 4
A
147 148anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 268first strand
Strand 2
A
275 278anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 58first strand
Strand 2
B
64 70anti-parallel
Strand 3
B
22 24anti-parallel
Strand 4
B
147 148anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
265 268first strand
Strand 2
B
275 278anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il