Analysis of interatomic Contacts of Structural Units in PDB entry:
6QMA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QMA entry

There are 2 chains in PDB entry 6QMA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 15ALA 718
B
 GLU 15ALA 718
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 6QMA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 50Right-handed alpha
Helix 2
AA2
A
72 90Right-handed alpha
Helix 3
AA3
A
102 108Right-handed alpha
Helix 4
AA4
A
111 125Right-handed alpha
Helix 5
AA5
A
152 166Right-handed alpha
Helix 6
AA6
A
170 182Right-handed alpha
Helix 7
AA7
A
182 211Right-handed alpha
Helix 8
AA8
A
217 246Right-handed alpha
Helix 9
AA9
A
280 318Right-handed alpha
Helix 10
AB1
A
325 358Right-handed alpha
Helix 11
AB2
A
362 391Right-handed alpha
Helix 12
AB3
A
400 415Right-handed alpha
Helix 13
AB4
A
431 453Right-handed alpha
Helix 14
AB5
A
453 468Right-handed alpha
Helix 15
AB6
A
477 481Right-handed 310
Helix 16
AB7
A
482 495Right-handed alpha
Helix 17
AB8
A
500 518Right-handed alpha
Helix 18
AB9
A
523 543Right-handed alpha
Helix 19
AC1
A
559 585Right-handed alpha
Helix 20
AC2
A
598 627Right-handed alpha
Helix 21
AC3
A
629 650Right-handed alpha
Helix 22
AC4
A
666 684Right-handed alpha
Helix 23
AC5
A
689 696Right-handed alpha
Helix 24
AC6
A
700 718Right-handed alpha
Helix 25
AC7
B
32 50Right-handed alpha
Helix 26
AC8
B
72 90Right-handed alpha
Helix 27
AC9
B
102 108Right-handed alpha
Helix 28
AD1
B
111 125Right-handed alpha
Helix 29
AD2
B
152 166Right-handed alpha
Helix 30
AD3
B
170 182Right-handed alpha
Helix 31
AD4
B
182 211Right-handed alpha
Helix 32
AD5
B
217 246Right-handed alpha
Helix 33
AD6
B
280 318Right-handed alpha
Helix 34
AD7
B
325 358Right-handed alpha
Helix 35
AD8
B
362 391Right-handed alpha
Helix 36
AD9
B
400 415Right-handed alpha
Helix 37
AE1
B
431 453Right-handed alpha
Helix 38
AE2
B
453 468Right-handed alpha
Helix 39
AE3
B
477 481Right-handed 310
Helix 40
AE4
B
482 495Right-handed alpha
Helix 41
AE5
B
500 518Right-handed alpha
Helix 42
AE6
B
523 543Right-handed alpha
Helix 43
AE7
B
559 585Right-handed alpha
Helix 44
AE8
B
598 627Right-handed alpha
Helix 45
AE9
B
629 650Right-handed alpha
Helix 46
AF1
B
666 684Right-handed alpha
Helix 47
AF2
B
689 696Right-handed alpha
Helix 48
AF3
B
700 718Right-handed alpha
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There are 4 sheets in PDB entry 6QMA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 59first strand
Strand 2
A
63 70anti-parallel
Strand 3
A
22 24anti-parallel
Strand 4
A
147 148anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 266first strand
Strand 2
A
277 278anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 59first strand
Strand 2
B
63 70anti-parallel
Strand 3
B
22 24anti-parallel
Strand 4
B
147 148anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
265 266first strand
Strand 2
B
277 278anti-parallel
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