Analysis of interatomic Contacts of Structural Units in PDB entry:
6QMB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QMB entry

There are 2 chains in PDB entry 6QMB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 15ALA 718
B
 GLU 15ALA 718
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 6QMB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 31Right-handed 310
Helix 2
AA2
A
32 50Right-handed alpha
Helix 3
AA3
A
72 90Right-handed alpha
Helix 4
AA4
A
101 105Right-handed 310
Helix 5
AA5
A
111 125Right-handed alpha
Helix 6
AA6
A
126 130Right-handed 310
Helix 7
AA7
A
152 166Right-handed alpha
Helix 8
AA8
A
170 182Right-handed alpha
Helix 9
AA9
A
183 199Right-handed alpha
Helix 10
AB1
A
199 212Right-handed alpha
Helix 11
AB2
A
217 246Right-handed alpha
Helix 12
AB3
A
250 254Right-handed 310
Helix 13
AB4
A
280 289Right-handed alpha
Helix 14
AB5
A
290 320Right-handed alpha
Helix 15
AB6
A
326 329Right-handed 310
Helix 16
AB7
A
330 358Right-handed alpha
Helix 17
AB8
A
362 391Right-handed alpha
Helix 18
AB9
A
397 399Right-handed 310
Helix 19
AC1
A
400 416Right-handed alpha
Helix 20
AC2
A
431 453Right-handed alpha
Helix 21
AC3
A
453 466Right-handed alpha
Helix 22
AC4
A
482 494Right-handed alpha
Helix 23
AC5
A
499 518Right-handed alpha
Helix 24
AC6
A
523 546Right-handed alpha
Helix 25
AC7
A
560 585Right-handed alpha
Helix 26
AC8
A
598 626Right-handed alpha
Helix 27
AC9
A
629 650Right-handed alpha
Helix 28
AD1
A
666 684Right-handed alpha
Helix 29
AD2
A
689 696Right-handed alpha
Helix 30
AD3
A
700 718Right-handed alpha
Helix 31
AD4
B
29 31Right-handed 310
Helix 32
AD5
B
32 50Right-handed alpha
Helix 33
AD6
B
72 90Right-handed alpha
Helix 34
AD7
B
101 105Right-handed 310
Helix 35
AD8
B
111 125Right-handed alpha
Helix 36
AD9
B
126 130Right-handed 310
Helix 37
AE1
B
152 166Right-handed alpha
Helix 38
AE2
B
170 182Right-handed alpha
Helix 39
AE3
B
183 199Right-handed alpha
Helix 40
AE4
B
199 212Right-handed alpha
Helix 41
AE5
B
217 246Right-handed alpha
Helix 42
AE6
B
250 254Right-handed 310
Helix 43
AE7
B
280 289Right-handed alpha
Helix 44
AE8
B
290 320Right-handed alpha
Helix 45
AE9
B
326 329Right-handed 310
Helix 46
AF1
B
330 358Right-handed alpha
Helix 47
AF2
B
362 391Right-handed alpha
Helix 48
AF3
B
397 399Right-handed 310
Helix 49
AF4
B
400 416Right-handed alpha
Helix 50
AF5
B
431 453Right-handed alpha
Helix 51
AF6
B
453 466Right-handed alpha
Helix 52
AF7
B
482 494Right-handed alpha
Helix 53
AF8
B
499 518Right-handed alpha
Helix 54
AF9
B
523 546Right-handed alpha
Helix 55
AG1
B
560 585Right-handed alpha
Helix 56
AG2
B
598 626Right-handed alpha
Helix 57
AG3
B
629 650Right-handed alpha
Helix 58
AG4
B
666 684Right-handed alpha
Helix 59
AG5
B
689 696Right-handed alpha
Helix 60
AG6
B
700 718Right-handed alpha
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There are 4 sheets in PDB entry 6QMB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 59first strand
Strand 2
A
63 69anti-parallel
Strand 3
A
22 24anti-parallel
Strand 4
A
147 149anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 266first strand
Strand 2
A
277 278anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 59first strand
Strand 2
B
63 69anti-parallel
Strand 3
B
22 24anti-parallel
Strand 4
B
147 149anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
265 266first strand
Strand 2
B
277 278anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il