Analysis of interatomic Contacts of Structural Units in PDB entry:
6QMM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QMM entry

There are 2 chains in PDB entry 6QMM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLN 285
B
 PRO 6GLN 285
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 6QMM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
61 76Right-handed alpha
Helix 2
AA2
A
90 97Right-handed alpha
Helix 3
AA3
A
111 122Right-handed alpha
Helix 4
AA4
A
140 148Right-handed alpha
Helix 5
AA5
A
172 182Right-handed alpha
Helix 6
AA6
A
199 214Right-handed alpha
Helix 7
AA7
A
242 246Right-handed 310
Helix 8
AA8
A
248 256Right-handed alpha
Helix 9
AA9
A
257 259Right-handed 310
Helix 10
AB1
A
263 270Right-handed alpha
Helix 11
AB2
A
274 285Right-handed alpha
Helix 12
AB3
B
61 76Right-handed alpha
Helix 13
AB4
B
90 97Right-handed alpha
Helix 14
AB5
B
111 122Right-handed alpha
Helix 15
AB6
B
140 148Right-handed alpha
Helix 16
AB7
B
167 171Right-handed 310
Helix 17
AB8
B
172 182Right-handed alpha
Helix 18
AB9
B
199 214Right-handed alpha
Helix 19
AC1
B
242 246Right-handed 310
Helix 20
AC2
B
248 256Right-handed alpha
Helix 21
AC3
B
257 259Right-handed 310
Helix 22
AC4
B
263 271Right-handed alpha
Helix 23
AC5
B
274 284Right-handed alpha
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There are 4 sheets in PDB entry 6QMM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 13first strand
Strand 2
A
17 30anti-parallel
Strand 3
B
17 30anti-parallel
Strand 4
B
7 13anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 57first strand
Strand 2
A
45 50anti-parallel
Strand 3
A
35 41anti-parallel
Strand 4
A
17 30anti-parallel
Strand 5
B
17 30anti-parallel
Strand 6
B
35 41anti-parallel
Strand 7
B
45 50anti-parallel
Strand 8
B
53 57anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 138first strand
Strand 2
A
104 109parallel
Strand 3
A
81 86parallel
Strand 4
A
153 159parallel
Strand 5
A
183 194parallel
Strand 6
A
231 238anti-parallel
Strand 7
A
216 223anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 138first strand
Strand 2
B
104 109parallel
Strand 3
B
81 86parallel
Strand 4
B
153 159parallel
Strand 5
B
183 192parallel
Strand 6
B
231 238anti-parallel
Strand 7
B
216 223anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il