Analysis of interatomic Contacts of Structural Units in PDB entry:
6QNM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QNM entry

There are 2 chains in PDB entry 6QNM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 4PHE 255
B
 GLY 5PHE 255
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6QNM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
56 66Right-handed alpha
Helix 2
AA2
A
69 71Right-handed 310
Helix 3
AA3
A
88 96Right-handed alpha
Helix 4
AA4
A
104 108Right-handed alpha
Helix 5
AA5
A
117 119Right-handed 310
Helix 6
AA6
A
184 200Right-handed alpha
Helix 7
AA7
A
202 216Right-handed alpha
Helix 8
AA8
A
231 243Right-handed alpha
Helix 9
AA9
A
246 254Right-handed 310
Helix 10
AB1
B
56 65Right-handed alpha
Helix 11
AB2
B
69 71Right-handed 310
Helix 12
AB3
B
88 96Right-handed alpha
Helix 13
AB4
B
104 108Right-handed alpha
Helix 14
AB5
B
117 119Right-handed 310
Helix 15
AB6
B
184 200Right-handed alpha
Helix 16
AB7
B
202 217Right-handed alpha
Helix 17
AB8
B
232 243Right-handed alpha
Helix 18
AB9
B
246 254Right-handed 310
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There are 4 sheets in PDB entry 6QNM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 13first strand
Strand 2
A
17 23anti-parallel
Strand 3
A
35 42anti-parallel
Strand 4
A
45 49anti-parallel
Strand 5
A
73 77parallel
Strand 6
A
99 103parallel
Strand 7
A
121 124parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 132first strand
Strand 2
A
138 143anti-parallel
Strand 3
A
153 157anti-parallel
Strand 4
A
162 166anti-parallel
Strand 5
A
220 223parallel
Strand 6
A
229 230anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 13first strand
Strand 2
B
17 23anti-parallel
Strand 3
B
37 42anti-parallel
Strand 4
B
45 49anti-parallel
Strand 5
B
73 77parallel
Strand 6
B
99 103parallel
Strand 7
B
121 124parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 132first strand
Strand 2
B
138 143anti-parallel
Strand 3
B
153 157anti-parallel
Strand 4
B
162 166anti-parallel
Strand 5
B
220 223parallel
Strand 6
B
229 230anti-parallel
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