Analysis of interatomic Contacts of Structural Units in PDB entry:
6QNP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6QNP entry

There are 8 chains in PDB entry 6QNP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 3	LEU 363
B	ILE 4	LEU 363
C	GLN 3	ALA 358
D	ILE 4	LEU 357
H	SER 686	SER 718
I	SER 686	SER 718
J	ALA 660	LEU 716
K	SER 661	SER 718

There are 17 helices in PDB entry 6QNP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	19	Right-handed 310
Helix 2	AA2	A	145	149	Right-handed 310
Helix 3	AA3	A	333	341	Right-handed alpha
Helix 4	AA4	A	344	355	Right-handed alpha
Helix 5	AA5	B	16	19	Right-handed 310
Helix 6	AA6	B	145	149	Right-handed 310
Helix 7	AA7	B	333	341	Right-handed alpha
Helix 8	AA8	B	344	356	Right-handed alpha
Helix 9	AA9	C	16	18	Right-handed 310
Helix 10	AB1	C	21	25	Right-handed 310
Helix 11	AB2	C	145	149	Right-handed 310
Helix 12	AB3	C	333	341	Right-handed alpha
Helix 13	AB4	C	344	355	Right-handed alpha
Helix 14	AB5	D	16	18	Right-handed 310
Helix 15	AB6	D	145	149	Right-handed 310
Helix 16	AB7	D	333	341	Right-handed alpha
Helix 17	AB8	D	344	355	Right-handed alpha

There are 28 sheets in PDB entry 6QNP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	14	first strand
Strand 2	A	323	329	anti-parallel
Strand 3	A	314	319	anti-parallel
Strand 4	A	303	309	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	31	first strand
Strand 2	A	37	44	anti-parallel
Strand 3	A	47	54	anti-parallel
Strand 4	A	62	65	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	73	first strand
Strand 2	A	79	84	anti-parallel
Strand 3	A	87	92	anti-parallel
Strand 4	A	97	103	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	113	first strand
Strand 2	A	118	122	anti-parallel
Strand 3	A	126	131	anti-parallel
Strand 4	A	139	143	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	158	first strand
Strand 2	A	164	172	anti-parallel
Strand 3	A	177	185	anti-parallel
Strand 4	A	190	195	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	205	first strand
Strand 2	A	212	221	anti-parallel
Strand 3	A	226	232	anti-parallel
Strand 4	A	246	250	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	267	first strand
Strand 2	A	272	277	anti-parallel
Strand 3	A	281	286	anti-parallel
Strand 4	A	292	297	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	14	first strand
Strand 2	B	323	329	anti-parallel
Strand 3	B	314	319	anti-parallel
Strand 4	B	303	309	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	31	first strand
Strand 2	B	37	44	anti-parallel
Strand 3	B	47	54	anti-parallel
Strand 4	B	62	65	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	73	first strand
Strand 2	B	79	84	anti-parallel
Strand 3	B	87	92	anti-parallel
Strand 4	B	97	103	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	113	first strand
Strand 2	B	118	122	anti-parallel
Strand 3	B	126	131	anti-parallel
Strand 4	B	139	143	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	158	first strand
Strand 2	B	164	172	anti-parallel
Strand 3	B	177	185	anti-parallel
Strand 4	B	190	195	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	204	first strand
Strand 2	B	213	222	anti-parallel
Strand 3	B	225	232	anti-parallel
Strand 4	B	246	250	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	261	267	first strand
Strand 2	B	272	277	anti-parallel
Strand 3	B	281	286	anti-parallel
Strand 4	B	292	297	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	14	first strand
Strand 2	C	323	329	anti-parallel
Strand 3	C	314	319	anti-parallel
Strand 4	C	303	309	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	31	first strand
Strand 2	C	37	44	anti-parallel
Strand 3	C	47	54	anti-parallel
Strand 4	C	62	65	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	73	first strand
Strand 2	C	79	84	anti-parallel
Strand 3	C	87	92	anti-parallel
Strand 4	C	97	103	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	113	first strand
Strand 2	C	118	122	anti-parallel
Strand 3	C	126	131	anti-parallel
Strand 4	C	138	143	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	152	158	first strand
Strand 2	C	164	173	anti-parallel
Strand 3	C	176	185	anti-parallel
Strand 4	C	190	194	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	198	204	first strand
Strand 2	C	213	220	anti-parallel
Strand 3	C	226	232	anti-parallel
Strand 4	C	246	250	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	261	267	first strand
Strand 2	C	272	277	anti-parallel
Strand 3	C	281	286	anti-parallel
Strand 4	C	292	297	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	14	first strand
Strand 2	D	323	329	anti-parallel
Strand 3	D	314	319	anti-parallel
Strand 4	D	303	309	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	31	first strand
Strand 2	D	37	44	anti-parallel
Strand 3	D	47	54	anti-parallel
Strand 4	D	62	65	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	70	73	first strand
Strand 2	D	79	84	anti-parallel
Strand 3	D	87	92	anti-parallel
Strand 4	D	97	103	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	110	113	first strand
Strand 2	D	118	122	anti-parallel
Strand 3	D	126	131	anti-parallel
Strand 4	D	139	143	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	152	158	first strand
Strand 2	D	164	171	anti-parallel
Strand 3	D	178	185	anti-parallel
Strand 4	D	190	194	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	198	204	first strand
Strand 2	D	213	220	anti-parallel
Strand 3	D	226	232	anti-parallel
Strand 4	D	246	250	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	261	267	first strand
Strand 2	D	272	277	anti-parallel
Strand 3	D	281	286	anti-parallel
Strand 4	D	292	297	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6QNP

Analysis of interatomic Contacts of Structural Units in PDB entry:
6QNP