Analysis of interatomic Contacts of Structural Units in PDB entry:
6QNS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QNS entry

There are 2 chains in PDB entry 6QNS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 862GLU 1291
S
 GLU 37HIS 52
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 5 helices in PDB entry 6QNS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
938 940Right-handed 310
Helix 2
AA2
A
941 948Right-handed alpha
Helix 3
AA3
A
1067 1080Right-handed alpha
Helix 4
AA4
A
1262 1267Right-handed alpha
Helix 5
AA5
S
38 52Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 6QNS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
875 877first strand
Strand 2
A
864 870anti-parallel
Strand 3
A
1054 1062anti-parallel
Strand 4
A
898 901anti-parallel
Strand 5
A
892 893anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
875 877first strand
Strand 2
A
864 870anti-parallel
Strand 3
A
1054 1062anti-parallel
Strand 4
A
927 933anti-parallel
Strand 5
A
1003 1009anti-parallel
Strand 6
A
1013 1018anti-parallel
Strand 7
A
1021 1027anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
884 887first strand
Strand 2
A
909 912anti-parallel
Strand 3
A
1040 1045anti-parallel
Strand 4
A
949 957anti-parallel
Strand 5
A
960 967anti-parallel
Strand 6
A
970 976anti-parallel
Strand 7
A
982 988anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1099 1102first strand
Strand 2
A
1280 1283anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1108 1112first strand
Strand 2
A
1119 1123anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1145 1149first strand
Strand 2
A
1166 1173anti-parallel
Strand 3
A
1176 1183anti-parallel
Strand 4
A
1194 1197anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1190 1192first strand
Strand 2
A
1252 1260anti-parallel
Strand 3
A
1234 1246anti-parallel
Strand 4
A
1222 1226anti-parallel
Strand 5
A
1207 1211anti-parallel
Strand 6
A
1166 1173anti-parallel
Strand 7
A
1176 1183anti-parallel
Strand 8
A
1204 1205anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il