Analysis of interatomic Contacts of Structural Units in PDB entry:
6QNT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QNT entry

There are 4 chains in PDB entry 6QNT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASN 130ASP 318
B
ASN 130ASP 318
C
ASN 130ASP 318
D
PRO 108LYS 331
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 6QNT. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
177 182Right-handed alpha
Helix 2
AA2
A
246 248Right-handed 310
Helix 3
AA3
B
182 186Right-handed 310
Helix 4
AA4
C
182 186Right-handed 310
Helix 5
AA5
C
226 230Right-handed 310
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There are 16 sheets in PDB entry 6QNT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
215 216first strand
Strand 2
A
132 134anti-parallel
Strand 3
A
160 163anti-parallel
Strand 4
A
166 168anti-parallel
Strand 5
A
313 315anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
154 158first strand
Strand 2
A
171 175anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
189 197first strand
Strand 2
A
284 292anti-parallel
Strand 3
A
265 272anti-parallel
Strand 4
A
250 252anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
189 197first strand
Strand 2
A
284 292anti-parallel
Strand 3
A
265 272anti-parallel
Strand 4
A
255 257anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
132 133first strand
Strand 2
B
160 163anti-parallel
Strand 3
B
166 168anti-parallel
Strand 4
B
313 315anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
154 158first strand
Strand 2
B
171 175anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
188 197first strand
Strand 2
B
284 293anti-parallel
Strand 3
B
264 273anti-parallel
Strand 4
B
250 258anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
215 216first strand
Strand 2
C
132 134anti-parallel
Strand 3
C
160 163anti-parallel
Strand 4
C
166 168anti-parallel
Strand 5
C
313 315anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
154 158first strand
Strand 2
C
171 175anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
188 189first strand
Strand 2
C
285 293anti-parallel
Strand 3
C
192 196anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
188 189first strand
Strand 2
C
285 293anti-parallel
Strand 3
C
264 273anti-parallel
Strand 4
C
250 258anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
114 120first strand
Strand 2
D
207 214parallel
Strand 3
D
185 193anti-parallel
Strand 4
D
148 154anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
128 131first strand
Strand 2
D
170 173anti-parallel
Strand 3
D
162 164anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
230 231first strand
Strand 2
D
328 329parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
240 245first strand
Strand 2
D
282 287anti-parallel
Strand 3
D
272 277anti-parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
262 265first strand
Strand 2
D
301 304anti-parallel
Strand 3
D
324 326anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il