Analysis of interatomic Contacts of Structural Units in PDB entry:
6QP2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QP2 entry

There are 3 chains in PDB entry 6QP2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 3TYR 402
B
 GLY -3GLU 399
C
 HIS -1HIS 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 6QP2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 21Right-handed alpha
Helix 2
AA2
A
54 66Right-handed alpha
Helix 3
AA3
A
78 93Right-handed alpha
Helix 4
AA4
A
97 99Right-handed 310
Helix 5
AA5
A
106 119Right-handed alpha
Helix 6
AA6
A
132 141Right-handed alpha
Helix 7
AA7
A
161 172Right-handed alpha
Helix 8
AA8
A
191 205Right-handed alpha
Helix 9
AA9
A
227 232Right-handed alpha
Helix 10
AB1
A
250 254Right-handed 310
Helix 11
AB2
A
262 273Right-handed alpha
Helix 12
AB3
A
278 292Right-handed alpha
Helix 13
AB4
A
292 318Right-handed alpha
Helix 14
AB5
A
336 344Right-handed alpha
Helix 15
AB6
A
348 358Right-handed alpha
Helix 16
AB7
A
365 367Right-handed 310
Helix 17
AB8
A
382 399Right-handed alpha
Helix 18
AB9
B
16 21Right-handed alpha
Helix 19
AC1
B
21 27Right-handed alpha
Helix 20
AC2
B
54 66Right-handed alpha
Helix 21
AC3
B
78 93Right-handed alpha
Helix 22
AC4
B
97 99Right-handed 310
Helix 23
AC5
B
106 119Right-handed alpha
Helix 24
AC6
B
132 141Right-handed alpha
Helix 25
AC7
B
161 172Right-handed alpha
Helix 26
AC8
B
191 205Right-handed alpha
Helix 27
AC9
B
227 232Right-handed alpha
Helix 28
AD1
B
250 254Right-handed 310
Helix 29
AD2
B
262 273Right-handed alpha
Helix 30
AD3
B
278 292Right-handed alpha
Helix 31
AD4
B
292 318Right-handed alpha
Helix 32
AD5
B
336 343Right-handed alpha
Helix 33
AD6
B
348 358Right-handed alpha
Helix 34
AD7
B
365 367Right-handed 310
Helix 35
AD8
B
382 398Right-handed alpha
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There are 7 sheets in PDB entry 6QP2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 43first strand
Strand 2
A
359 360parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 104first strand
Strand 2
A
256 260anti-parallel
Strand 3
A
238 242anti-parallel
Strand 4
A
208 212parallel
Strand 5
A
174 180parallel
Strand 6
A
124 129parallel
Strand 7
A
145 150parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 335first strand
Strand 2
A
374 378anti-parallel
Strand 3
A
362 363anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 43first strand
Strand 2
B
359 360parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 104first strand
Strand 2
B
256 259anti-parallel
Strand 3
B
238 242anti-parallel
Strand 4
B
208 212parallel
Strand 5
B
174 180parallel
Strand 6
B
124 129parallel
Strand 7
B
145 150parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 154first strand
Strand 2
B
157 159anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
331 335first strand
Strand 2
B
374 378anti-parallel
Strand 3
B
362 363anti-parallel
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