Analysis of interatomic Contacts of Structural Units in PDB entry:
6QP3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6QP3 entry

There are 4 chains in PDB entry 6QP3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	SER 387
B	ASN 2	SER 387
C	MET 1	LEU 386
D	ASN 2	SER 387

There are 80 helices in PDB entry 6QP3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	19	Right-handed alpha
Helix 2	AA2	A	19	25	Right-handed alpha
Helix 3	AA3	A	42	56	Right-handed alpha
Helix 4	AA4	A	64	80	Right-handed alpha
Helix 5	AA5	A	84	86	Right-handed 310
Helix 6	AA6	A	93	106	Right-handed alpha
Helix 7	AA7	A	120	128	Right-handed alpha
Helix 8	AA8	A	148	157	Right-handed alpha
Helix 9	AA9	A	178	193	Right-handed alpha
Helix 10	AB1	A	214	218	Right-handed 310
Helix 11	AB2	A	219	225	Right-handed alpha
Helix 12	AB3	A	232	237	Right-handed alpha
Helix 13	AB4	A	238	242	Right-handed 310
Helix 14	AB5	A	250	264	Right-handed alpha
Helix 15	AB6	A	270	284	Right-handed alpha
Helix 16	AB7	A	284	310	Right-handed alpha
Helix 17	AB8	A	329	332	Right-handed 310
Helix 18	AB9	A	334	345	Right-handed alpha
Helix 19	AC1	A	354	357	Right-handed 310
Helix 20	AC2	A	371	386	Right-handed alpha
Helix 21	AC3	B	14	19	Right-handed alpha
Helix 22	AC4	B	19	25	Right-handed alpha
Helix 23	AC5	B	42	56	Right-handed alpha
Helix 24	AC6	B	64	80	Right-handed alpha
Helix 25	AC7	B	84	86	Right-handed 310
Helix 26	AC8	B	93	106	Right-handed alpha
Helix 27	AC9	B	120	128	Right-handed alpha
Helix 28	AD1	B	148	158	Right-handed alpha
Helix 29	AD2	B	178	192	Right-handed alpha
Helix 30	AD3	B	202	206	Right-handed 310
Helix 31	AD4	B	214	218	Right-handed 310
Helix 32	AD5	B	219	225	Right-handed alpha
Helix 33	AD6	B	232	237	Right-handed alpha
Helix 34	AD7	B	238	242	Right-handed 310
Helix 35	AD8	B	250	264	Right-handed alpha
Helix 36	AD9	B	270	284	Right-handed alpha
Helix 37	AE1	B	284	310	Right-handed alpha
Helix 38	AE2	B	329	332	Right-handed 310
Helix 39	AE3	B	334	345	Right-handed alpha
Helix 40	AE4	B	354	357	Right-handed 310
Helix 41	AE5	B	371	387	Right-handed alpha
Helix 42	AE6	C	14	19	Right-handed alpha
Helix 43	AE7	C	19	25	Right-handed alpha
Helix 44	AE8	C	42	56	Right-handed alpha
Helix 45	AE9	C	64	80	Right-handed alpha
Helix 46	AF1	C	84	86	Right-handed 310
Helix 47	AF2	C	93	106	Right-handed alpha
Helix 48	AF3	C	120	128	Right-handed alpha
Helix 49	AF4	C	148	157	Right-handed alpha
Helix 50	AF5	C	178	192	Right-handed alpha
Helix 51	AF6	C	214	218	Right-handed 310
Helix 52	AF7	C	219	224	Right-handed alpha
Helix 53	AF8	C	232	237	Right-handed alpha
Helix 54	AF9	C	238	242	Right-handed 310
Helix 55	AG1	C	250	264	Right-handed alpha
Helix 56	AG2	C	270	284	Right-handed alpha
Helix 57	AG3	C	284	310	Right-handed alpha
Helix 58	AG4	C	329	332	Right-handed 310
Helix 59	AG5	C	334	345	Right-handed alpha
Helix 60	AG6	C	354	357	Right-handed 310
Helix 61	AG7	C	371	386	Right-handed alpha
Helix 62	AG8	D	14	19	Right-handed alpha
Helix 63	AG9	D	19	25	Right-handed alpha
Helix 64	AH1	D	42	56	Right-handed alpha
Helix 65	AH2	D	64	80	Right-handed alpha
Helix 66	AH3	D	84	86	Right-handed 310
Helix 67	AH4	D	93	106	Right-handed alpha
Helix 68	AH5	D	120	128	Right-handed alpha
Helix 69	AH6	D	148	156	Right-handed alpha
Helix 70	AH7	D	178	192	Right-handed alpha
Helix 71	AH8	D	214	218	Right-handed 310
Helix 72	AH9	D	219	224	Right-handed alpha
Helix 73	AI1	D	238	242	Right-handed 310
Helix 74	AI2	D	250	264	Right-handed alpha
Helix 75	AI3	D	270	284	Right-handed alpha
Helix 76	AI4	D	284	310	Right-handed alpha
Helix 77	AI5	D	329	332	Right-handed 310
Helix 78	AI6	D	334	345	Right-handed alpha
Helix 79	AI7	D	354	357	Right-handed 310
Helix 80	AI8	D	371	387	Right-handed alpha

There are 16 sheets in PDB entry 6QP3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	31	first strand
Strand 2	A	348	349	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	91	first strand
Strand 2	A	244	247	anti-parallel
Strand 3	A	226	230	anti-parallel
Strand 4	A	195	199	parallel
Strand 5	A	161	167	parallel
Strand 6	A	111	114	parallel
Strand 7	A	132	135	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	140	first strand
Strand 2	A	145	146	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	314	315	first strand
Strand 2	A	323	327	anti-parallel
Strand 3	A	363	367	anti-parallel
Strand 4	A	351	352	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	31	first strand
Strand 2	B	348	349	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	91	first strand
Strand 2	B	244	247	anti-parallel
Strand 3	B	226	230	anti-parallel
Strand 4	B	195	199	parallel
Strand 5	B	161	167	parallel
Strand 6	B	111	114	parallel
Strand 7	B	132	135	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	141	first strand
Strand 2	B	144	147	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	314	316	first strand
Strand 2	B	323	327	anti-parallel
Strand 3	B	363	367	anti-parallel
Strand 4	B	351	352	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	31	first strand
Strand 2	C	348	349	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	91	first strand
Strand 2	C	244	247	anti-parallel
Strand 3	C	226	230	anti-parallel
Strand 4	C	195	199	parallel
Strand 5	C	161	167	parallel
Strand 6	C	111	114	parallel
Strand 7	C	132	135	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	141	first strand
Strand 2	C	144	146	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	314	316	first strand
Strand 2	C	323	327	anti-parallel
Strand 3	C	363	367	anti-parallel
Strand 4	C	351	352	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	31	first strand
Strand 2	D	348	349	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	91	first strand
Strand 2	D	244	247	anti-parallel
Strand 3	D	226	230	anti-parallel
Strand 4	D	195	199	parallel
Strand 5	D	161	167	parallel
Strand 6	D	111	114	parallel
Strand 7	D	132	135	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	139	141	first strand
Strand 2	D	144	146	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	314	316	first strand
Strand 2	D	323	327	anti-parallel
Strand 3	D	363	367	anti-parallel
Strand 4	D	351	352	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6QP3

Analysis of interatomic Contacts of Structural Units in PDB entry:
6QP3