Analysis of interatomic Contacts of Structural Units in PDB entry:
6QP7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6QP7 entry

There are 2 chains in PDB entry 6QP7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 30	ARG 665
B	ASN 32	HIS 664

There are 32 helices in PDB entry 6QP7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	75	77	Right-handed 310
Helix 2	AA2	A	95	99	Right-handed 310
Helix 3	AA3	A	111	121	Right-handed alpha
Helix 4	AA4	A	168	172	Right-handed 310
Helix 5	AA5	A	200	204	Right-handed 310
Helix 6	AA6	A	274	277	Right-handed 310
Helix 7	AA7	A	362	371	Right-handed alpha
Helix 8	AA8	A	387	391	Right-handed 310
Helix 9	AA9	A	402	406	Right-handed 310
Helix 10	AB1	A	407	417	Right-handed alpha
Helix 11	AB2	A	524	529	Right-handed alpha
Helix 12	AB3	A	531	536	Right-handed alpha
Helix 13	AB4	A	569	573	Right-handed 310
Helix 14	AB5	A	595	599	Right-handed 310
Helix 15	AB6	A	638	642	Right-handed 310
Helix 16	AB7	B	95	99	Right-handed 310
Helix 17	AB8	B	111	120	Right-handed alpha
Helix 18	AB9	B	140	142	Right-handed 310
Helix 19	AC1	B	168	172	Right-handed 310
Helix 20	AC2	B	200	204	Right-handed 310
Helix 21	AC3	B	274	277	Right-handed 310
Helix 22	AC4	B	298	302	Right-handed 310
Helix 23	AC5	B	362	371	Right-handed alpha
Helix 24	AC6	B	387	391	Right-handed 310
Helix 25	AC7	B	402	406	Right-handed 310
Helix 26	AC8	B	407	417	Right-handed alpha
Helix 27	AC9	B	427	430	Right-handed 310
Helix 28	AD1	B	524	529	Right-handed alpha
Helix 29	AD2	B	531	536	Right-handed alpha
Helix 30	AD3	B	569	573	Right-handed 310
Helix 31	AD4	B	595	599	Right-handed 310
Helix 32	AD5	B	638	642	Right-handed 310

There are 26 sheets in PDB entry 6QP7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	34	first strand
Strand 2	A	586	591	parallel
Strand 3	A	632	634	anti-parallel
Strand 4	A	624	626	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	61	first strand
Strand 2	A	517	521	anti-parallel
Strand 3	A	508	512	anti-parallel
Strand 4	A	499	503	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	74	first strand
Strand 2	A	79	84	anti-parallel
Strand 3	A	87	92	anti-parallel
Strand 4	A	105	107	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	139	first strand
Strand 2	A	144	149	anti-parallel
Strand 3	A	156	161	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	196	first strand
Strand 2	A	206	212	anti-parallel
Strand 3	A	220	224	anti-parallel
Strand 4	A	240	241	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	229	first strand
Strand 2	A	234	237	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	261	first strand
Strand 2	A	264	272	anti-parallel
Strand 3	A	283	291	anti-parallel
Strand 4	A	309	312	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	316	317	first strand
Strand 2	A	323	324	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	332	first strand
Strand 2	A	340	346	anti-parallel
Strand 3	A	354	361	anti-parallel
Strand 4	A	433	436	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	376	first strand
Strand 2	A	383	386	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	440	450	first strand
Strand 2	A	455	464	anti-parallel
Strand 3	A	468	477	anti-parallel
Strand 4	A	480	490	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	541	544	first strand
Strand 2	A	549	552	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	575	581	first strand
Strand 2	A	652	662	parallel
Strand 3	A	643	649	anti-parallel
Strand 4	A	603	609	anti-parallel
Strand 5	A	613	616	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	61	first strand
Strand 2	B	517	521	anti-parallel
Strand 3	B	508	512	anti-parallel
Strand 4	B	499	503	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	74	first strand
Strand 2	B	79	84	anti-parallel
Strand 3	B	87	92	anti-parallel
Strand 4	B	105	107	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	139	first strand
Strand 2	B	144	149	anti-parallel
Strand 3	B	156	161	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	196	first strand
Strand 2	B	206	212	anti-parallel
Strand 3	B	220	224	anti-parallel
Strand 4	B	240	241	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	229	first strand
Strand 2	B	234	237	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	254	261	first strand
Strand 2	B	264	272	anti-parallel
Strand 3	B	283	291	anti-parallel
Strand 4	B	309	314	anti-parallel
Strand 5	B	424	425	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	316	317	first strand
Strand 2	B	323	324	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	327	334	first strand
Strand 2	B	337	346	anti-parallel
Strand 3	B	354	361	anti-parallel
Strand 4	B	433	436	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	374	375	first strand
Strand 2	B	384	385	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	440	450	first strand
Strand 2	B	455	464	anti-parallel
Strand 3	B	468	477	anti-parallel
Strand 4	B	480	490	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	541	544	first strand
Strand 2	B	549	552	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	574	581	first strand
Strand 2	B	652	662	parallel
Strand 3	B	643	649	anti-parallel
Strand 4	B	603	609	anti-parallel
Strand 5	B	613	616	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	586	588	first strand
Strand 2	B	632	634	anti-parallel
Strand 3	B	624	626	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6QP7

Analysis of interatomic Contacts of Structural Units in PDB entry:
6QP7