Analysis of interatomic Contacts of Structural Units in PDB entry:
6QP8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6QP8 entry

There are 2 chains in PDB entry 6QP8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 40	HIS 672
B	ASN 40	ASP 670

There are 31 helices in PDB entry 6QP8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	81	83	Right-handed 310
Helix 2	AA2	A	101	105	Right-handed 310
Helix 3	AA3	A	117	126	Right-handed alpha
Helix 4	AA4	A	207	211	Right-handed 310
Helix 5	AA5	A	281	284	Right-handed 310
Helix 6	AA6	A	305	309	Right-handed 310
Helix 7	AA7	A	369	378	Right-handed alpha
Helix 8	AA8	A	394	398	Right-handed 310
Helix 9	AA9	A	409	413	Right-handed 310
Helix 10	AB1	A	414	424	Right-handed alpha
Helix 11	AB2	A	433	437	Right-handed 310
Helix 12	AB3	A	532	537	Right-handed alpha
Helix 13	AB4	A	539	544	Right-handed alpha
Helix 14	AB5	A	577	581	Right-handed 310
Helix 15	AB6	A	603	607	Right-handed 310
Helix 16	AB7	B	81	83	Right-handed 310
Helix 17	AB8	B	101	105	Right-handed 310
Helix 18	AB9	B	117	127	Right-handed alpha
Helix 19	AC1	B	207	211	Right-handed 310
Helix 20	AC2	B	281	284	Right-handed 310
Helix 21	AC3	B	305	309	Right-handed 310
Helix 22	AC4	B	369	377	Right-handed alpha
Helix 23	AC5	B	394	398	Right-handed 310
Helix 24	AC6	B	409	413	Right-handed 310
Helix 25	AC7	B	414	424	Right-handed alpha
Helix 26	AC8	B	433	437	Right-handed 310
Helix 27	AC9	B	458	461	Right-handed 310
Helix 28	AD1	B	532	537	Right-handed alpha
Helix 29	AD2	B	539	544	Right-handed alpha
Helix 30	AD3	B	573	581	Right-handed 310
Helix 31	AD4	B	603	607	Right-handed 310

There are 26 sheets in PDB entry 6QP8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	67	first strand
Strand 2	A	525	529	anti-parallel
Strand 3	A	516	520	anti-parallel
Strand 4	A	507	511	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	80	first strand
Strand 2	A	85	90	anti-parallel
Strand 3	A	93	98	anti-parallel
Strand 4	A	111	113	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	146	first strand
Strand 2	A	150	156	anti-parallel
Strand 3	A	163	167	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	203	first strand
Strand 2	A	213	218	anti-parallel
Strand 3	A	228	231	anti-parallel
Strand 4	A	247	248	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	235	first strand
Strand 2	A	242	244	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	268	first strand
Strand 2	A	271	279	anti-parallel
Strand 3	A	290	298	anti-parallel
Strand 4	A	316	319	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	324	first strand
Strand 2	A	330	331	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	334	339	first strand
Strand 2	A	347	353	anti-parallel
Strand 3	A	361	368	anti-parallel
Strand 4	A	440	443	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	381	382	first strand
Strand 2	A	391	392	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	447	457	first strand
Strand 2	A	462	471	anti-parallel
Strand 3	A	475	484	anti-parallel
Strand 4	A	487	497	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	549	552	first strand
Strand 2	A	557	560	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	584	588	first strand
Strand 2	A	660	669	parallel
Strand 3	A	651	657	anti-parallel
Strand 4	A	611	616	anti-parallel
Strand 5	A	623	624	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	594	596	first strand
Strand 2	A	640	642	anti-parallel
Strand 3	A	632	634	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	67	first strand
Strand 2	B	525	529	anti-parallel
Strand 3	B	516	520	anti-parallel
Strand 4	B	507	511	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	80	first strand
Strand 2	B	85	89	anti-parallel
Strand 3	B	93	98	anti-parallel
Strand 4	B	111	113	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	146	first strand
Strand 2	B	150	156	anti-parallel
Strand 3	B	163	168	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	203	first strand
Strand 2	B	213	219	anti-parallel
Strand 3	B	227	231	anti-parallel
Strand 4	B	247	248	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	235	first strand
Strand 2	B	242	244	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	261	268	first strand
Strand 2	B	271	279	anti-parallel
Strand 3	B	290	298	anti-parallel
Strand 4	B	316	319	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	323	324	first strand
Strand 2	B	330	331	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	334	339	first strand
Strand 2	B	347	353	anti-parallel
Strand 3	B	361	368	anti-parallel
Strand 4	B	440	443	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	381	383	first strand
Strand 2	B	390	392	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	447	456	first strand
Strand 2	B	463	471	anti-parallel
Strand 3	B	475	484	anti-parallel
Strand 4	B	487	497	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	549	552	first strand
Strand 2	B	557	560	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	582	588	first strand
Strand 2	B	661	669	parallel
Strand 3	B	651	657	anti-parallel
Strand 4	B	611	617	anti-parallel
Strand 5	B	621	624	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	594	596	first strand
Strand 2	B	640	642	anti-parallel
Strand 3	B	632	634	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6QP8

Analysis of interatomic Contacts of Structural Units in PDB entry:
6QP8