Analysis of interatomic Contacts of Structural Units in PDB entry:
6QP9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6QP9 entry

There are 2 chains in PDB entry 6QP9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 80	PRO 601
B	GLY 80	PRO 601

There are 12 helices in PDB entry 6QP9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	134	141	Right-handed alpha
Helix 2	AA2	A	270	275	Right-handed alpha
Helix 3	AA3	A	365	374	Right-handed alpha
Helix 4	AA4	A	413	418	Right-handed alpha
Helix 5	AA5	A	429	433	Right-handed 310
Helix 6	AA6	A	554	561	Right-handed alpha
Helix 7	AA7	B	134	141	Right-handed alpha
Helix 8	AA8	B	270	277	Right-handed alpha
Helix 9	AA9	B	365	374	Right-handed alpha
Helix 10	AB1	B	413	418	Right-handed alpha
Helix 11	AB2	B	429	433	Right-handed 310
Helix 12	AB3	B	553	561	Right-handed alpha

There are 19 sheets in PDB entry 6QP9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	87	first strand
Strand 2	A	538	541	anti-parallel
Strand 3	A	530	534	anti-parallel
Strand 4	A	506	511	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	101	first strand
Strand 2	A	106	110	anti-parallel
Strand 3	A	114	118	anti-parallel
Strand 4	A	125	130	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	159	first strand
Strand 2	A	166	170	anti-parallel
Strand 3	A	177	181	anti-parallel
Strand 4	A	192	195	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	212	first strand
Strand 2	A	217	222	anti-parallel
Strand 3	A	230	233	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	257	first strand
Strand 2	A	261	269	anti-parallel
Strand 3	A	280	288	anti-parallel
Strand 4	A	306	309	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	314	first strand
Strand 2	A	320	321	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	328	first strand
Strand 2	A	342	349	anti-parallel
Strand 3	A	332	333	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	328	first strand
Strand 2	A	342	349	anti-parallel
Strand 3	A	358	364	anti-parallel
Strand 4	A	436	438	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	445	451	first strand
Strand 2	A	464	469	anti-parallel
Strand 3	A	475	480	anti-parallel
Strand 4	A	490	493	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	566	567	first strand
Strand 2	A	574	575	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	101	first strand
Strand 2	B	106	110	anti-parallel
Strand 3	B	115	118	anti-parallel
Strand 4	B	125	129	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	159	first strand
Strand 2	B	167	170	anti-parallel
Strand 3	B	177	180	anti-parallel
Strand 4	B	192	195	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	212	first strand
Strand 2	B	217	222	anti-parallel
Strand 3	B	230	233	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	254	257	first strand
Strand 2	B	261	269	anti-parallel
Strand 3	B	280	288	anti-parallel
Strand 4	B	306	309	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	313	314	first strand
Strand 2	B	320	321	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	324	328	first strand
Strand 2	B	343	349	anti-parallel
Strand 3	B	358	364	anti-parallel
Strand 4	B	436	438	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	449	451	first strand
Strand 2	B	464	467	anti-parallel
Strand 3	B	475	480	anti-parallel
Strand 4	B	490	495	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	506	511	first strand
Strand 2	B	530	534	anti-parallel
Strand 3	B	538	541	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	566	567	first strand
Strand 2	B	574	575	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6QP9

Analysis of interatomic Contacts of Structural Units in PDB entry:
6QP9