Analysis of interatomic Contacts of Structural Units in PDB entry:
6QPB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QPB entry

There are 2 chains in PDB entry 6QPB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 45LYS 877
B
 GLN 45LYS 877
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 6QPB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
91 109Right-handed alpha
Helix 2
AA2
A
131 143Right-handed alpha
Helix 3
AA3
A
205 220Right-handed alpha
Helix 4
AA4
A
233 240Right-handed alpha
Helix 5
AA5
A
264 273Right-handed alpha
Helix 6
AA6
A
275 279Right-handed 310
Helix 7
AA7
A
284 327Right-handed alpha
Helix 8
AA8
A
331 338Right-handed alpha
Helix 9
AA9
A
342 346Right-handed 310
Helix 10
AB1
A
364 375Right-handed alpha
Helix 11
AB2
A
376 408Right-handed alpha
Helix 12
AB3
A
420 427Right-handed alpha
Helix 13
AB4
A
448 489Right-handed alpha
Helix 14
AB5
A
504 539Right-handed alpha
Helix 15
AB6
A
543 573Right-handed alpha
Helix 16
AB7
A
601 624Right-handed alpha
Helix 17
AB8
A
625 632Right-handed alpha
Helix 18
AB9
A
648 655Right-handed alpha
Helix 19
AC1
A
664 680Right-handed alpha
Helix 20
AC2
A
687 709Right-handed alpha
Helix 21
AC3
A
724 747Right-handed alpha
Helix 22
AC4
A
750 760Right-handed alpha
Helix 23
AC5
A
775 781Right-handed alpha
Helix 24
AC6
A
825 857Right-handed alpha
Helix 25
AC7
A
861 877Right-handed alpha
Helix 26
AC8
B
91 109Right-handed alpha
Helix 27
AC9
B
131 143Right-handed alpha
Helix 28
AD1
B
205 220Right-handed alpha
Helix 29
AD2
B
233 240Right-handed alpha
Helix 30
AD3
B
264 273Right-handed alpha
Helix 31
AD4
B
275 279Right-handed 310
Helix 32
AD5
B
284 327Right-handed alpha
Helix 33
AD6
B
331 338Right-handed alpha
Helix 34
AD7
B
342 346Right-handed 310
Helix 35
AD8
B
364 375Right-handed alpha
Helix 36
AD9
B
376 408Right-handed alpha
Helix 37
AE1
B
420 427Right-handed alpha
Helix 38
AE2
B
448 489Right-handed alpha
Helix 39
AE3
B
504 539Right-handed alpha
Helix 40
AE4
B
543 573Right-handed alpha
Helix 41
AE5
B
601 624Right-handed alpha
Helix 42
AE6
B
625 632Right-handed alpha
Helix 43
AE7
B
648 655Right-handed alpha
Helix 44
AE8
B
664 680Right-handed alpha
Helix 45
AE9
B
687 709Right-handed alpha
Helix 46
AF1
B
724 747Right-handed alpha
Helix 47
AF2
B
750 760Right-handed alpha
Helix 48
AF3
B
775 781Right-handed alpha
Helix 49
AF4
B
825 857Right-handed alpha
Helix 50
AF5
B
861 877Right-handed alpha
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There are 4 sheets in PDB entry 6QPB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 78first strand
Strand 2
A
123 129anti-parallel
Strand 3
A
111 116anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
782 785first strand
Strand 2
A
806 809anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 78first strand
Strand 2
B
123 129anti-parallel
Strand 3
B
111 116anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
782 785first strand
Strand 2
B
806 809anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il