Analysis of interatomic Contacts of Structural Units in PDB entry:
6QPH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6QPH entry

There are 5 chains in PDB entry 6QPH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	GLN 32	PRO 226
2	ALA 62	HIS 272
3	TYR 73	THR 282
4	ASP 123	PHE 333
A	VAL 13	PRO 468

There are107 helices in PDB entry 6QPH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	1	44	48	Right-handed 310
Helix 2	AA2	1	66	96	Right-handed alpha
Helix 3	AA3	1	105	110	Right-handed alpha
Helix 4	AA4	1	123	144	Right-handed alpha
Helix 5	AA5	1	155	159	Right-handed 310
Helix 6	AA6	1	162	165	Right-handed 310
Helix 7	AA7	1	166	198	Right-handed alpha
Helix 8	AA8	1	201	212	Right-handed alpha
Helix 9	AA9	2	95	130	Right-handed alpha
Helix 10	AB1	2	138	146	Right-handed alpha
Helix 11	AB2	2	152	175	Right-handed alpha
Helix 12	AB3	2	211	242	Right-handed alpha
Helix 13	AB4	2	246	256	Right-handed alpha
Helix 14	AB5	3	105	136	Right-handed alpha
Helix 15	AB6	3	146	150	Right-handed 310
Helix 16	AB7	3	165	190	Right-handed alpha
Helix 17	AB8	3	192	197	Right-handed alpha
Helix 18	AB9	3	203	207	Right-handed 310
Helix 19	AC1	3	228	260	Right-handed alpha
Helix 20	AC2	3	263	274	Right-handed alpha
Helix 21	AC3	4	155	182	Right-handed alpha
Helix 22	AC4	4	183	190	Right-handed alpha
Helix 23	AC5	4	196	205	Right-handed alpha
Helix 24	AC6	4	214	236	Right-handed alpha
Helix 25	AC7	4	249	252	Right-handed 310
Helix 26	AC8	4	275	300	Right-handed alpha
Helix 27	AC9	4	303	314	Right-handed alpha
Helix 28	AD1	4	319	323	Right-handed 310
Helix 29	AD2	4	327	331	Right-handed 310
Helix 30	AD3	A	26	31	Right-handed alpha
Helix 31	AD4	A	36	41	Right-handed alpha
Helix 32	AD5	A	46	56	Right-handed alpha
Helix 33	AD6	A	58	63	Right-handed alpha
Helix 34	AD7	A	65	98	Right-handed alpha
Helix 35	AD8	A	100	107	Right-handed alpha
Helix 36	AD9	A	123	128	Right-handed 310
Helix 37	AE1	A	144	150	Right-handed alpha
Helix 38	AE2	A	156	183	Right-handed alpha
Helix 39	AE3	A	187	192	Right-handed alpha
Helix 40	AE4	A	193	202	Right-handed alpha
Helix 41	AE5	A	203	220	Right-handed alpha
Helix 42	AE6	A	220	226	Right-handed alpha
Helix 43	AE7	A	227	231	Right-handed 310
Helix 44	AE8	A	239	245	Right-handed alpha
Helix 45	AE9	A	246	254	Right-handed alpha
Helix 46	AF1	A	290	309	Right-handed alpha
Helix 47	AF2	A	321	328	Right-handed alpha
Helix 48	AF3	A	340	348	Right-handed alpha
Helix 49	AF4	A	348	373	Right-handed alpha
Helix 50	AF5	A	383	415	Right-handed alpha
Helix 51	AF6	A	424	433	Right-handed alpha
Helix 52	AF7	A	435	453	Right-handed alpha
Helix 53	AF8	A	453	465	Right-handed alpha
Helix 54	AF9	A	467	471	Right-handed 310
Helix 55	AG1	A	482	493	Right-handed alpha
Helix 56	AG2	A	529	556	Right-handed alpha
Helix 57	AG3	A	587	618	Right-handed alpha
Helix 58	AG4	A	641	648	Right-handed alpha
Helix 59	AG5	A	649	654	Right-handed alpha
Helix 60	AG6	A	654	660	Right-handed alpha
Helix 61	AG7	A	665	688	Right-handed alpha
Helix 62	AG8	A	690	706	Right-handed alpha
Helix 63	AG9	A	719	747	Right-handed alpha
Helix 64	AH1	B	19	28	Right-handed alpha
Helix 65	AH2	B	40	72	Right-handed alpha
Helix 66	AH3	B	75	80	Right-handed alpha
Helix 67	AH4	B	98	105	Right-handed alpha
Helix 68	AH5	B	120	128	Right-handed alpha
Helix 69	AH6	B	133	157	Right-handed alpha
Helix 70	AH7	B	166	171	Right-handed alpha
Helix 71	AH8	B	171	182	Right-handed alpha
Helix 72	AH9	B	184	198	Right-handed alpha
Helix 73	AI1	B	198	204	Right-handed alpha
Helix 74	AI2	B	223	228	Right-handed alpha
Helix 75	AI3	B	230	235	Right-handed 310
Helix 76	AI4	B	272	289	Right-handed alpha
Helix 77	AI5	B	302	307	Right-handed alpha
Helix 78	AI6	B	322	329	Right-handed alpha
Helix 79	AI7	B	330	354	Right-handed alpha
Helix 80	AI8	B	367	398	Right-handed alpha
Helix 81	AI9	B	407	415	Right-handed alpha
Helix 82	AJ1	B	415	447	Right-handed alpha
Helix 83	AJ2	B	449	453	Right-handed 310
Helix 84	AJ3	B	458	469	Right-handed alpha
Helix 85	AJ4	B	484	489	Right-handed alpha
Helix 86	AJ5	B	494	503	Right-handed alpha
Helix 87	AJ6	B	514	541	Right-handed alpha
Helix 88	AJ7	B	550	554	Right-handed 310
Helix 89	AJ8	B	572	604	Right-handed alpha
Helix 90	AJ9	B	606	614	Right-handed alpha
Helix 91	AK1	B	616	623	Right-handed alpha
Helix 92	AK2	B	629	634	Right-handed alpha
Helix 93	AK3	B	644	667	Right-handed alpha
Helix 94	AK4	B	668	686	Right-handed alpha
Helix 95	AK5	B	702	732	Right-handed alpha
Helix 96	AK6	C	53	58	Right-handed alpha
Helix 97	AK7	D	92	98	Right-handed alpha
Helix 98	AK8	D	135	148	Right-handed alpha
Helix 99	AK9	F	78	82	Right-handed 310
Helix 100	AL1	F	88	107	Right-handed alpha
Helix 101	AL2	F	113	134	Right-handed alpha
Helix 102	AL3	F	165	189	Right-handed alpha
Helix 103	AL4	F	194	201	Right-handed alpha
Helix 104	AL5	F	203	212	Right-handed alpha
Helix 105	AL6	F	216	228	Right-handed alpha
Helix 106	AL7	J	2	8	Right-handed alpha
Helix 107	AL8	J	16	33	Right-handed alpha

There are 14 sheets in PDB entry 6QPH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	254	256	first strand
Strand 2	4	259	260	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	18	first strand
Strand 2	A	185	186	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	116	first strand
Strand 2	A	136	139	anti-parallel
Strand 3	A	129	130	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	515	517	first strand
Strand 2	A	520	523	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	620	622	first strand
Strand 2	A	627	629	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	91	first strand
Strand 2	B	114	115	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	263	first strand
Strand 2	B	268	269	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	456	457	first strand
Strand 2	F	148	149	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	65	68	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	38	41	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	132	first strand
Strand 2	D	101	105	anti-parallel
Strand 3	D	154	158	anti-parallel
Strand 4	D	164	165	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	111	114	first strand
Strand 2	D	120	123	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	73	75	first strand
Strand 2	E	87	90	anti-parallel
Strand 3	E	102	105	anti-parallel
Strand 4	E	116	119	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	83	84	first strand
Strand 2	F	139	140	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6QPH

Analysis of interatomic Contacts of Structural Units in PDB entry:
6QPH