Analysis of interatomic Contacts of Structural Units in PDB entry:
6QPM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6QPM entry

There are 6 chains in PDB entry 6QPM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 187	GLN 369
B	THR 187	GLN 369
C	THR 187	GLN 369
D	THR 187	GLN 369
E	THR 187	GLN 369
F	THR 187	GLN 369

There are 13 helices in PDB entry 6QPM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	306	308	Right-handed 310
Helix 2	AA2	A	318	320	Right-handed 310
Helix 3	AA3	B	306	308	Right-handed 310
Helix 4	AA4	B	318	320	Right-handed 310
Helix 5	AA5	C	306	308	Right-handed 310
Helix 6	AA6	C	318	320	Right-handed 310
Helix 7	AA7	D	306	308	Right-handed 310
Helix 8	AA8	D	318	320	Right-handed 310
Helix 9	AA9	E	287	291	Right-handed 310
Helix 10	AB1	E	306	308	Right-handed 310
Helix 11	AB2	E	318	320	Right-handed 310
Helix 12	AB3	F	306	308	Right-handed 310
Helix 13	AB4	F	318	320	Right-handed 310

There are 30 sheets in PDB entry 6QPM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	273	first strand
Strand 2	A	189	192	anti-parallel
Strand 3	A	213	217	anti-parallel
Strand 4	A	220	225	anti-parallel
Strand 5	A	361	366	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	210	first strand
Strand 2	A	227	229	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	238	first strand
Strand 2	A	352	355	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	247	254	first strand
Strand 2	A	339	346	anti-parallel
Strand 3	A	324	331	anti-parallel
Strand 4	A	310	311	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	247	254	first strand
Strand 2	A	339	346	anti-parallel
Strand 3	A	324	331	anti-parallel
Strand 4	A	314	316	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	273	first strand
Strand 2	B	189	192	anti-parallel
Strand 3	B	213	217	anti-parallel
Strand 4	B	220	225	anti-parallel
Strand 5	B	361	366	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	210	first strand
Strand 2	B	227	229	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	238	first strand
Strand 2	B	352	355	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	247	254	first strand
Strand 2	B	339	346	anti-parallel
Strand 3	B	324	331	anti-parallel
Strand 4	B	310	311	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	247	254	first strand
Strand 2	B	339	346	anti-parallel
Strand 3	B	324	331	anti-parallel
Strand 4	B	314	316	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	273	first strand
Strand 2	C	189	192	anti-parallel
Strand 3	C	213	217	anti-parallel
Strand 4	C	220	225	anti-parallel
Strand 5	C	361	366	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	208	210	first strand
Strand 2	C	227	229	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	236	238	first strand
Strand 2	C	352	355	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	247	254	first strand
Strand 2	C	339	346	anti-parallel
Strand 3	C	324	331	anti-parallel
Strand 4	C	310	311	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	247	254	first strand
Strand 2	C	339	346	anti-parallel
Strand 3	C	324	331	anti-parallel
Strand 4	C	314	316	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	271	273	first strand
Strand 2	D	190	192	anti-parallel
Strand 3	D	213	217	anti-parallel
Strand 4	D	220	225	anti-parallel
Strand 5	D	361	366	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	208	210	first strand
Strand 2	D	227	229	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	236	238	first strand
Strand 2	D	352	355	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	247	254	first strand
Strand 2	D	339	346	anti-parallel
Strand 3	D	324	331	anti-parallel
Strand 4	D	310	311	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	247	254	first strand
Strand 2	D	339	346	anti-parallel
Strand 3	D	324	331	anti-parallel
Strand 4	D	314	316	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	271	273	first strand
Strand 2	E	189	192	anti-parallel
Strand 3	E	213	217	anti-parallel
Strand 4	E	220	225	anti-parallel
Strand 5	E	361	366	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	208	210	first strand
Strand 2	E	227	229	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	236	237	first strand
Strand 2	E	354	355	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	247	254	first strand
Strand 2	E	339	346	anti-parallel
Strand 3	E	324	331	anti-parallel
Strand 4	E	310	311	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	247	254	first strand
Strand 2	E	339	346	anti-parallel
Strand 3	E	324	331	anti-parallel
Strand 4	E	314	316	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	278	279	first strand
Strand 2	F	271	275	anti-parallel
Strand 3	F	189	192	anti-parallel
Strand 4	F	213	217	anti-parallel
Strand 5	F	220	225	anti-parallel
Strand 6	F	361	366	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	208	210	first strand
Strand 2	F	227	229	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	236	238	first strand
Strand 2	F	352	355	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	247	254	first strand
Strand 2	F	339	346	anti-parallel
Strand 3	F	324	331	anti-parallel
Strand 4	F	310	311	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	247	254	first strand
Strand 2	F	339	346	anti-parallel
Strand 3	F	324	331	anti-parallel
Strand 4	F	314	316	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6QPM

Analysis of interatomic Contacts of Structural Units in PDB entry:
6QPM