Analysis of interatomic Contacts of Structural Units in PDB entry:
6QPQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QPQ entry

There are 4 chains in PDB entry 6QPQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2HIS 1266
B
 LYS 483PHE 563
C
 GLY 2HIS 1266
D
 LYS 483ILE 564
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 6QPQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 51Right-handed alpha
Helix 2
AA2
A
61 66Right-handed 310
Helix 3
AA3
A
153 163Right-handed alpha
Helix 4
AA4
A
176 186Right-handed alpha
Helix 5
AA5
A
187 200Right-handed alpha
Helix 6
AA6
A
201 203Right-handed 310
Helix 7
AA7
A
204 242Right-handed alpha
Helix 8
AA8
A
243 248Right-handed alpha
Helix 9
AA9
A
1065 1124Right-handed alpha
Helix 10
AB1
A
1146 1150Right-handed 310
Helix 11
AB2
A
1165 1169Right-handed 310
Helix 12
AB3
A
1170 1187Right-handed alpha
Helix 13
AB4
A
1198 1203Right-handed 310
Helix 14
AB5
A
1204 1217Right-handed alpha
Helix 15
AB6
A
1231 1236Right-handed alpha
Helix 16
AB7
A
1261 1263Right-handed 310
Helix 17
AB8
B
484 499Right-handed alpha
Helix 18
AB9
B
504 513Right-handed alpha
Helix 19
AC1
B
515 519Right-handed 310
Helix 20
AC2
B
520 537Right-handed alpha
Helix 21
AC3
B
557 561Right-handed 310
Helix 22
AC4
C
40 51Right-handed alpha
Helix 23
AC5
C
61 66Right-handed 310
Helix 24
AC6
C
153 164Right-handed alpha
Helix 25
AC7
C
176 186Right-handed alpha
Helix 26
AC8
C
187 200Right-handed alpha
Helix 27
AC9
C
201 203Right-handed 310
Helix 28
AD1
C
204 240Right-handed alpha
Helix 29
AD2
C
1065 1124Right-handed alpha
Helix 30
AD3
C
1146 1150Right-handed 310
Helix 31
AD4
C
1167 1169Right-handed 310
Helix 32
AD5
C
1170 1187Right-handed alpha
Helix 33
AD6
C
1198 1203Right-handed 310
Helix 34
AD7
C
1204 1219Right-handed alpha
Helix 35
AD8
C
1231 1236Right-handed alpha
Helix 36
AD9
C
1261 1263Right-handed 310
Helix 37
AE1
D
484 497Right-handed alpha
Helix 38
AE2
D
504 513Right-handed alpha
Helix 39
AE3
D
515 519Right-handed 310
Helix 40
AE4
D
520 537Right-handed alpha
Helix 41
AE5
D
557 561Right-handed 310
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There are 8 sheets in PDB entry 6QPQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 22first strand
Strand 2
A
3 10anti-parallel
Strand 3
A
117 124anti-parallel
Strand 4
A
130 137anti-parallel
Strand 5
A
143 147anti-parallel
Strand 6
A
150 152anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 175first strand
Strand 2
A
1193 1196parallel
Strand 3
A
1224 1228parallel
Strand 4
A
28 32parallel
Strand 5
A
1240 1247parallel
Strand 6
A
1252 1259anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1135 1140first strand
Strand 2
A
1152 1157anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
501 503first strand
Strand 2
B
552 555anti-parallel
Strand 3
B
540 543anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
18 22first strand
Strand 2
C
3 10anti-parallel
Strand 3
C
117 124anti-parallel
Strand 4
C
130 137anti-parallel
Strand 5
C
143 147anti-parallel
Strand 6
C
150 152anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
174 175first strand
Strand 2
C
1193 1196parallel
Strand 3
C
1224 1228parallel
Strand 4
C
28 32parallel
Strand 5
C
1240 1247parallel
Strand 6
C
1252 1259anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1135 1140first strand
Strand 2
C
1152 1157anti-parallel
Strand 3
C
1164 1165anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
502 503first strand
Strand 2
D
552 555anti-parallel
Strand 3
D
540 543anti-parallel
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