Analysis of interatomic Contacts of Structural Units in PDB entry:
6QPR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QPR entry

There is 1 chain in PDB entry 6QPR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 37THR 363
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6QPR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 46Right-handed 310
Helix 2
AA2
A
59 66Right-handed alpha
Helix 3
AA3
A
104 121Right-handed alpha
Helix 4
AA4
A
136 141Right-handed 310
Helix 5
AA5
A
178 186Right-handed alpha
Helix 6
AA6
A
203 227Right-handed alpha
Helix 7
AA7
A
238 255Right-handed alpha
Helix 8
AA8
A
275 285Right-handed alpha
Helix 9
AA9
A
298 302Right-handed 310
Helix 10
AB1
A
304 308Right-handed 310
Helix 11
AB2
A
338 342Right-handed 310
Helix 12
AB3
A
348 351Right-handed 310
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There are 4 sheets in PDB entry 6QPR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 76first strand
Strand 2
A
79 80anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 102first strand
Strand 2
A
325 329anti-parallel
Strand 3
A
314 320anti-parallel
Strand 4
A
289 294parallel
Strand 5
A
263 268parallel
Strand 6
A
231 237parallel
Strand 7
A
168 173parallel
Strand 8
A
157 163anti-parallel
Strand 9
A
144 150anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 192first strand
Strand 2
A
200 202anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 354first strand
Strand 2
A
357 358anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il