Analysis of interatomic Contacts of Structural Units in PDB entry:
6QPT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6QPT entry

There are 5 chains in PDB entry 6QPT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 6	GLY 325
B	PRO 6	LEU 324
C	LEU 5	LEU 324
D	PRO 6	LEU 324
E	LEU 5	ARG 33

There are 36 helices in PDB entry 6QPT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	103	111	Right-handed 310
Helix 2	AA2	A	139	146	Right-handed alpha
Helix 3	AA3	A	189	195	Right-handed alpha
Helix 4	AA4	A	211	215	Right-handed 310
Helix 5	AA5	A	251	254	Right-handed 310
Helix 6	AA6	A	291	297	Right-handed alpha
Helix 7	AA7	B	103	111	Right-handed 310
Helix 8	AA8	B	139	146	Right-handed alpha
Helix 9	AA9	B	189	195	Right-handed alpha
Helix 10	AB1	B	211	215	Right-handed 310
Helix 11	AB2	B	251	254	Right-handed 310
Helix 12	AB3	B	291	297	Right-handed alpha
Helix 13	AB4	C	103	111	Right-handed 310
Helix 14	AB5	C	139	146	Right-handed alpha
Helix 15	AB6	C	189	195	Right-handed alpha
Helix 16	AB7	C	211	215	Right-handed 310
Helix 17	AB8	C	251	254	Right-handed 310
Helix 18	AB9	C	290	297	Right-handed alpha
Helix 19	AC1	D	103	111	Right-handed 310
Helix 20	AC2	D	139	146	Right-handed alpha
Helix 21	AC3	D	189	195	Right-handed alpha
Helix 22	AC4	D	211	215	Right-handed 310
Helix 23	AC5	D	251	254	Right-handed 310
Helix 24	AC6	D	291	297	Right-handed alpha
Helix 25	AC7	E	103	111	Right-handed 310
Helix 26	AC8	E	139	146	Right-handed alpha
Helix 27	AC9	E	189	195	Right-handed alpha
Helix 28	AD1	E	211	215	Right-handed 310
Helix 29	AD2	E	251	254	Right-handed 310
Helix 30	AD3	E	291	297	Right-handed alpha
Helix 31	AD4	F	103	111	Right-handed 310
Helix 32	AD5	F	139	146	Right-handed alpha
Helix 33	AD6	F	189	195	Right-handed alpha
Helix 34	AD7	F	211	215	Right-handed 310
Helix 35	AD8	F	251	254	Right-handed 310
Helix 36	AD9	F	291	297	Right-handed alpha

There are 30 sheets in PDB entry 6QPT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	18	first strand
Strand 2	A	38	53	parallel
Strand 3	A	56	63	anti-parallel
Strand 4	A	184	186	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	18	first strand
Strand 2	A	38	53	parallel
Strand 3	A	79	86	parallel
Strand 4	A	117	124	anti-parallel
Strand 5	B	314	322	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	75	first strand
Strand 2	A	149	155	parallel
Strand 3	A	129	134	anti-parallel
Strand 4	A	97	98	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	203	first strand
Strand 2	A	165	174	anti-parallel
Strand 3	A	223	232	parallel
Strand 4	A	270	277	anti-parallel
Strand 5	A	246	250	anti-parallel
Strand 6	A	258	261	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	219	first strand
Strand 2	A	300	306	parallel
Strand 3	A	282	288	anti-parallel
Strand 4	A	237	242	anti-parallel
Strand 5	A	263	266	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	314	322	first strand
Strand 2	C	117	124	anti-parallel
Strand 3	C	79	86	anti-parallel
Strand 4	C	38	53	parallel
Strand 5	C	17	18	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	314	322	first strand
Strand 2	C	117	124	anti-parallel
Strand 3	C	79	86	anti-parallel
Strand 4	C	38	53	parallel
Strand 5	C	56	63	anti-parallel
Strand 6	C	184	185	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	18	first strand
Strand 2	B	38	53	parallel
Strand 3	B	56	63	anti-parallel
Strand 4	B	184	186	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	18	first strand
Strand 2	B	38	53	parallel
Strand 3	B	79	86	parallel
Strand 4	B	117	124	anti-parallel
Strand 5	C	314	322	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	75	first strand
Strand 2	B	149	155	parallel
Strand 3	B	129	134	anti-parallel
Strand 4	B	97	98	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	200	203	first strand
Strand 2	B	165	174	anti-parallel
Strand 3	B	223	232	parallel
Strand 4	B	270	277	anti-parallel
Strand 5	B	246	250	anti-parallel
Strand 6	B	258	261	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	219	first strand
Strand 2	B	300	306	parallel
Strand 3	B	282	288	anti-parallel
Strand 4	B	237	242	anti-parallel
Strand 5	B	263	266	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	75	first strand
Strand 2	C	149	155	parallel
Strand 3	C	129	134	anti-parallel
Strand 4	C	97	98	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	200	203	first strand
Strand 2	C	165	174	anti-parallel
Strand 3	C	223	232	parallel
Strand 4	C	270	277	anti-parallel
Strand 5	C	246	250	anti-parallel
Strand 6	C	258	261	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	216	219	first strand
Strand 2	C	300	306	parallel
Strand 3	C	282	288	anti-parallel
Strand 4	C	237	242	anti-parallel
Strand 5	C	263	266	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	18	first strand
Strand 2	D	38	53	parallel
Strand 3	D	56	63	anti-parallel
Strand 4	D	184	185	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	18	first strand
Strand 2	D	38	53	parallel
Strand 3	D	79	86	parallel
Strand 4	D	117	124	anti-parallel
Strand 5	E	314	322	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	72	75	first strand
Strand 2	D	149	155	parallel
Strand 3	D	129	134	anti-parallel
Strand 4	D	97	98	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	200	203	first strand
Strand 2	D	165	174	anti-parallel
Strand 3	D	223	232	parallel
Strand 4	D	270	277	anti-parallel
Strand 5	D	246	250	anti-parallel
Strand 6	D	258	261	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	216	219	first strand
Strand 2	D	300	306	parallel
Strand 3	D	282	288	anti-parallel
Strand 4	D	237	242	anti-parallel
Strand 5	D	263	266	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	314	322	first strand
Strand 2	F	117	124	anti-parallel
Strand 3	F	79	86	anti-parallel
Strand 4	F	38	53	parallel
Strand 5	F	17	18	parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	314	322	first strand
Strand 2	F	117	124	anti-parallel
Strand 3	F	79	86	anti-parallel
Strand 4	F	38	53	parallel
Strand 5	F	56	63	anti-parallel
Strand 6	F	184	185	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	17	18	first strand
Strand 2	E	38	53	parallel
Strand 3	E	56	63	anti-parallel
Strand 4	E	184	185	parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	17	18	first strand
Strand 2	E	38	53	parallel
Strand 3	E	79	86	parallel
Strand 4	E	117	124	anti-parallel
Strand 5	F	314	322	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	72	75	first strand
Strand 2	E	149	155	parallel
Strand 3	E	129	134	anti-parallel
Strand 4	E	97	98	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	200	203	first strand
Strand 2	E	165	174	anti-parallel
Strand 3	E	223	232	parallel
Strand 4	E	270	277	anti-parallel
Strand 5	E	246	250	anti-parallel
Strand 6	E	258	261	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	216	219	first strand
Strand 2	E	300	306	parallel
Strand 3	E	282	288	anti-parallel
Strand 4	E	237	242	anti-parallel
Strand 5	E	263	266	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	72	75	first strand
Strand 2	F	149	155	parallel
Strand 3	F	129	134	anti-parallel
Strand 4	F	97	98	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	200	203	first strand
Strand 2	F	165	174	anti-parallel
Strand 3	F	223	232	parallel
Strand 4	F	270	277	anti-parallel
Strand 5	F	246	250	anti-parallel
Strand 6	F	258	261	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	216	219	first strand
Strand 2	F	300	306	parallel
Strand 3	F	282	288	anti-parallel
Strand 4	F	237	242	anti-parallel
Strand 5	F	263	266	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6QPT

Analysis of interatomic Contacts of Structural Units in PDB entry:
6QPT