Analysis of interatomic Contacts of Structural Units in PDB entry:
6QPW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QPW entry

There are 4 chains in PDB entry 6QPW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2SER 234
B
 LYS 483PHE 563
C
 TYR 2ARG 1222
E
 HIS 1069HIS 1266
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 6QPW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 50Right-handed alpha
Helix 2
AA2
A
62 66Right-handed 310
Helix 3
AA3
A
153 164Right-handed alpha
Helix 4
AA4
A
178 185Right-handed alpha
Helix 5
AA5
A
187 199Right-handed alpha
Helix 6
AA6
A
204 234Right-handed alpha
Helix 7
AA7
B
484 499Right-handed alpha
Helix 8
AA8
B
504 513Right-handed alpha
Helix 9
AA9
B
515 519Right-handed 310
Helix 10
AB1
B
520 537Right-handed alpha
Helix 11
AB2
B
557 561Right-handed 310
Helix 12
AB3
C
41 46Right-handed alpha
Helix 13
AB4
C
57 65Right-handed alpha
Helix 14
AB5
C
124 134Right-handed alpha
Helix 15
AB6
C
158 171Right-handed alpha
Helix 16
AB7
C
172 175Right-handed 310
Helix 17
AB8
C
176 204Right-handed alpha
Helix 18
AB9
C
1012 1060Right-handed alpha
Helix 19
AC1
C
1127 1143Right-handed alpha
Helix 20
AC2
C
1161 1176Right-handed alpha
Helix 21
AC3
C
1187 1191Right-handed 310
Helix 22
AC4
C
1215 1221Right-handed alpha
Helix 23
AC5
E
1070 1126Right-handed alpha
Helix 24
AC6
E
1146 1150Right-handed 310
Helix 25
AC7
E
1165 1169Right-handed 310
Helix 26
AC8
E
1170 1187Right-handed alpha
Helix 27
AC9
E
1204 1219Right-handed alpha
Helix 28
AD1
E
1231 1236Right-handed alpha
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There are 6 sheets in PDB entry 6QPW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 22first strand
Strand 2
A
3 10anti-parallel
Strand 3
A
117 124anti-parallel
Strand 4
A
133 137anti-parallel
Strand 5
A
143 147anti-parallel
Strand 6
A
150 152anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 175first strand
Strand 2
E
1193 1196parallel
Strand 3
E
1224 1228parallel
Strand 4
A
28 32parallel
Strand 5
E
1240 1247parallel
Strand 6
E
1252 1259anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
501 503first strand
Strand 2
B
552 555anti-parallel
Strand 3
B
540 543anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
18 20first strand
Strand 2
C
3 9anti-parallel
Strand 3
C
77 82anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1150 1154first strand
Strand 2
C
1180 1184parallel
Strand 3
C
27 31parallel
Strand 4
C
1196 1202parallel
Strand 5
C
1207 1210anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1135 1140first strand
Strand 2
E
1152 1157anti-parallel
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