Analysis of interatomic Contacts of Structural Units in PDB entry:
6QPX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6QPX entry

There are 2 chains in PDB entry 6QPX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 5	GLN 458
I	LEU 5	PRO 459

There are 28 helices in PDB entry 6QPX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	103	108	Right-handed 310
Helix 2	AA2	A	139	146	Right-handed alpha
Helix 3	AA3	A	189	195	Right-handed alpha
Helix 4	AA4	A	211	215	Right-handed 310
Helix 5	AA5	A	290	297	Right-handed alpha
Helix 6	AA6	A	320	325	Right-handed alpha
Helix 7	AA7	A	326	328	Right-handed 310
Helix 8	AA8	A	332	345	Right-handed alpha
Helix 9	AA9	A	348	361	Right-handed alpha
Helix 10	AB1	A	364	369	Right-handed alpha
Helix 11	AB2	A	385	391	Right-handed alpha
Helix 12	AB3	A	391	402	Right-handed alpha
Helix 13	AB4	A	425	438	Right-handed alpha
Helix 14	AB5	A	448	457	Right-handed alpha
Helix 15	AB6	I	103	112	Right-handed 310
Helix 16	AB7	I	139	146	Right-handed alpha
Helix 17	AB8	I	189	195	Right-handed alpha
Helix 18	AB9	I	211	215	Right-handed 310
Helix 19	AC1	I	290	297	Right-handed alpha
Helix 20	AC2	I	320	325	Right-handed alpha
Helix 21	AC3	I	326	328	Right-handed 310
Helix 22	AC4	I	332	345	Right-handed alpha
Helix 23	AC5	I	348	361	Right-handed alpha
Helix 24	AC6	I	364	369	Right-handed alpha
Helix 25	AC7	I	385	391	Right-handed alpha
Helix 26	AC8	I	391	402	Right-handed alpha
Helix 27	AC9	I	425	438	Right-handed alpha
Helix 28	AD1	I	448	458	Right-handed alpha

There are 12 sheets in PDB entry 6QPX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	18	first strand
Strand 2	A	38	53	parallel
Strand 3	A	79	86	parallel
Strand 4	A	118	124	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	18	first strand
Strand 2	A	38	53	parallel
Strand 3	A	56	63	anti-parallel
Strand 4	A	184	185	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	75	first strand
Strand 2	A	149	155	parallel
Strand 3	A	129	134	anti-parallel
Strand 4	A	97	98	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	203	first strand
Strand 2	A	165	174	anti-parallel
Strand 3	A	223	232	parallel
Strand 4	A	271	277	anti-parallel
Strand 5	A	246	251	anti-parallel
Strand 6	A	258	261	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	219	first strand
Strand 2	A	300	306	parallel
Strand 3	A	282	288	anti-parallel
Strand 4	A	237	242	anti-parallel
Strand 5	A	263	266	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	409	first strand
Strand 2	A	412	418	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	17	18	first strand
Strand 2	I	38	53	parallel
Strand 3	I	79	86	parallel
Strand 4	I	118	124	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	17	18	first strand
Strand 2	I	38	53	parallel
Strand 3	I	56	63	anti-parallel
Strand 4	I	184	186	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	72	75	first strand
Strand 2	I	149	155	parallel
Strand 3	I	129	134	anti-parallel
Strand 4	I	97	98	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	200	203	first strand
Strand 2	I	165	174	anti-parallel
Strand 3	I	223	232	parallel
Strand 4	I	271	277	anti-parallel
Strand 5	I	248	251	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	216	219	first strand
Strand 2	I	300	306	parallel
Strand 3	I	282	288	anti-parallel
Strand 4	I	237	242	anti-parallel
Strand 5	I	263	266	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	403	409	first strand
Strand 2	I	412	418	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6QPX

Analysis of interatomic Contacts of Structural Units in PDB entry:
6QPX