Analysis of interatomic Contacts of Structural Units in PDB entry:
6QQL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QQL entry

There are 2 chains in PDB entry 6QQL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 41LYS 329
B
 ALA 41VAL 328
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 6QQL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 59Right-handed alpha
Helix 2
AA2
A
66 83Right-handed alpha
Helix 3
AA3
A
136 142Right-handed 310
Helix 4
AA4
A
150 166Right-handed alpha
Helix 5
AA5
A
189 193Right-handed 310
Helix 6
AA6
A
194 203Right-handed alpha
Helix 7
AA7
A
230 237Right-handed alpha
Helix 8
AA8
A
237 251Right-handed alpha
Helix 9
AA9
A
268 277Right-handed alpha
Helix 10
AB1
A
304 308Right-handed 310
Helix 11
AB2
A
309 328Right-handed alpha
Helix 12
AB3
B
45 59Right-handed alpha
Helix 13
AB4
B
66 83Right-handed alpha
Helix 14
AB5
B
136 142Right-handed 310
Helix 15
AB6
B
150 166Right-handed alpha
Helix 16
AB7
B
189 193Right-handed 310
Helix 17
AB8
B
194 203Right-handed alpha
Helix 18
AB9
B
230 237Right-handed alpha
Helix 19
AC1
B
237 251Right-handed alpha
Helix 20
AC2
B
268 277Right-handed alpha
Helix 21
AC3
B
304 308Right-handed 310
Helix 22
AC4
B
309 328Right-handed alpha
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There are 4 sheets in PDB entry 6QQL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 95first strand
Strand 2
A
101 111anti-parallel
Strand 3
A
173 179anti-parallel
Strand 4
A
118 124parallel
Strand 5
A
213 218parallel
Strand 6
A
280 284parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 229first strand
Strand 2
A
257 261parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 95first strand
Strand 2
B
101 111anti-parallel
Strand 3
B
173 179anti-parallel
Strand 4
B
118 124parallel
Strand 5
B
213 218parallel
Strand 6
B
280 284parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
227 229first strand
Strand 2
B
257 261parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il