Analysis of interatomic Contacts of Structural Units in PDB entry:
6QR5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QR5 entry

There are 2 chains in PDB entry 6QR5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0LEU 227
B
 SER 0PRO 232
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6QR5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 12Right-handed 310
Helix 2
AA2
A
13 20Right-handed alpha
Helix 3
AA3
A
21 27Right-handed alpha
Helix 4
AA4
A
38 41Right-handed 310
Helix 5
AA5
A
62 74Right-handed alpha
Helix 6
AA6
A
91 99Right-handed alpha
Helix 7
AA7
A
116 123Right-handed alpha
Helix 8
AA8
A
141 154Right-handed alpha
Helix 9
AA9
A
196 201Right-handed 310
Helix 10
AB1
A
203 223Right-handed alpha
Helix 11
AB2
A
224 227Right-handed 310
Helix 12
AB3
B
9 17Right-handed 310
Helix 13
AB4
B
38 41Right-handed 310
Helix 14
AB5
B
62 74Right-handed alpha
Helix 15
AB6
B
91 99Right-handed alpha
Helix 16
AB7
B
116 123Right-handed alpha
Helix 17
AB8
B
141 154Right-handed alpha
Helix 18
AB9
B
196 201Right-handed 310
Helix 19
AC1
B
203 223Right-handed alpha
Helix 20
AC2
B
224 228Right-handed 310
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There are 6 sheets in PDB entry 6QR5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 36first strand
Strand 2
A
1 7parallel
Strand 3
A
103 107parallel
Strand 4
A
79 83parallel
Strand 5
A
127 132parallel
Strand 6
A
88 89parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 50first strand
Strand 2
A
60 61anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 190first strand
Strand 2
A
193 194anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 36first strand
Strand 2
B
1 7parallel
Strand 3
B
103 107parallel
Strand 4
B
79 83parallel
Strand 5
B
127 132parallel
Strand 6
B
88 89parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 50first strand
Strand 2
B
60 61anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
189 190first strand
Strand 2
B
193 194anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il