Analysis of interatomic Contacts of Structural Units in PDB entry:
6QRJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QRJ entry

There is 1 chain in PDB entry 6QRJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 13THR 496
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6QRJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 41Right-handed alpha
Helix 2
AA2
A
49 76Right-handed alpha
Helix 3
AA3
A
88 107Right-handed alpha
Helix 4
AA4
A
125 144Right-handed alpha
Helix 5
AA5
A
175 180Right-handed alpha
Helix 6
AA6
A
200 212Right-handed alpha
Helix 7
AA7
A
257 271Right-handed alpha
Helix 8
AA8
A
280 287Right-handed alpha
Helix 9
AA9
A
299 301Right-handed 310
Helix 10
AB1
A
302 306Right-handed 310
Helix 11
AB2
A
320 325Right-handed 310
Helix 12
AB3
A
326 333Right-handed alpha
Helix 13
AB4
A
344 353Right-handed alpha
Helix 14
AB5
A
369 373Right-handed 310
Helix 15
AB6
A
388 400Right-handed alpha
Helix 16
AB7
A
401 403Right-handed 310
Helix 17
AB8
A
411 421Right-handed alpha
Helix 18
AB9
A
437 448Right-handed alpha
Helix 19
AC1
A
466 474Right-handed alpha
Helix 20
AC2
A
483 495Right-handed alpha
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There are 4 sheets in PDB entry 6QRJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 87first strand
Strand 2
A
122 124anti-parallel
Strand 3
A
235 236anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 114first strand
Strand 2
A
148 156parallel
Strand 3
A
160 167anti-parallel
Strand 4
A
226 233anti-parallel
Strand 5
A
215 218anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 278first strand
Strand 2
A
250 254parallel
Strand 3
A
293 297parallel
Strand 4
A
315 319parallel
Strand 5
A
337 340parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
405 409first strand
Strand 2
A
381 385parallel
Strand 3
A
426 430parallel
Strand 4
A
455 457parallel
Strand 5
A
476 478parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il