Analysis of interatomic Contacts of Structural Units in PDB entry:
6QRO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QRO entry

There are 4 chains in PDB entry 6QRO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 44LYS 334
B
 PRO 44LYS 334
C
 PRO 44LYS 334
D
 PRO 44LYS 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 6QRO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 61Right-handed alpha
Helix 2
AA2
A
68 85Right-handed alpha
Helix 3
AA3
A
138 142Right-handed 310
Helix 4
AA4
A
152 169Right-handed alpha
Helix 5
AA5
A
200 209Right-handed alpha
Helix 6
AA6
A
236 243Right-handed alpha
Helix 7
AA7
A
243 257Right-handed alpha
Helix 8
AA8
A
273 283Right-handed alpha
Helix 9
AA9
A
310 314Right-handed 310
Helix 10
AB1
A
315 332Right-handed alpha
Helix 11
AB2
B
47 60Right-handed alpha
Helix 12
AB3
B
68 85Right-handed alpha
Helix 13
AB4
B
138 142Right-handed 310
Helix 14
AB5
B
152 169Right-handed alpha
Helix 15
AB6
B
200 209Right-handed alpha
Helix 16
AB7
B
237 257Right-handed alpha
Helix 17
AB8
B
273 283Right-handed alpha
Helix 18
AB9
B
310 314Right-handed 310
Helix 19
AC1
B
315 333Right-handed alpha
Helix 20
AC2
C
47 61Right-handed alpha
Helix 21
AC3
C
68 85Right-handed alpha
Helix 22
AC4
C
138 142Right-handed 310
Helix 23
AC5
C
152 169Right-handed alpha
Helix 24
AC6
C
200 209Right-handed alpha
Helix 25
AC7
C
236 257Right-handed alpha
Helix 26
AC8
C
273 283Right-handed alpha
Helix 27
AC9
C
310 314Right-handed 310
Helix 28
AD1
C
315 332Right-handed alpha
Helix 29
AD2
D
47 61Right-handed alpha
Helix 30
AD3
D
68 85Right-handed alpha
Helix 31
AD4
D
138 142Right-handed 310
Helix 32
AD5
D
152 169Right-handed alpha
Helix 33
AD6
D
200 209Right-handed alpha
Helix 34
AD7
D
236 257Right-handed alpha
Helix 35
AD8
D
273 283Right-handed alpha
Helix 36
AD9
D
310 314Right-handed 310
Helix 37
AE1
D
315 333Right-handed alpha
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There are 6 sheets in PDB entry 6QRO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 290first strand
Strand 2
A
220 224parallel
Strand 3
A
120 126parallel
Strand 4
A
174 180parallel
Strand 5
A
103 113anti-parallel
Strand 6
A
88 97anti-parallel
Strand 7
B
88 97parallel
Strand 8
B
103 113anti-parallel
Strand 9
B
174 180anti-parallel
Strand 10
B
120 126parallel
Strand 11
B
219 224parallel
Strand 12
B
286 290parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 235first strand
Strand 2
A
263 267parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 236first strand
Strand 2
B
263 269parallel
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There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
286 290first strand
Strand 2
C
219 224parallel
Strand 3
C
120 126parallel
Strand 4
C
174 180parallel
Strand 5
C
103 113anti-parallel
Strand 6
C
88 97anti-parallel
Strand 7
D
88 97parallel
Strand 8
D
103 113anti-parallel
Strand 9
D
174 180anti-parallel
Strand 10
D
120 126parallel
Strand 11
D
219 224parallel
Strand 12
D
286 290parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
233 235first strand
Strand 2
C
263 267parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
233 235first strand
Strand 2
D
263 267parallel
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