Analysis of interatomic Contacts of Structural Units in PDB entry:
6QRQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6QRQ entry

There are 4 chains in PDB entry 6QRQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	PHE 2	SER 252
A	MET 1	SER 252
C	GLU 3	SER 252
D	GLU 3	SER 252

There are 39 helices in PDB entry 6QRQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	51	61	Right-handed alpha
Helix 2	AA2	B	77	91	Right-handed alpha
Helix 3	AA3	B	101	110	Right-handed 310
Helix 4	AA4	B	180	185	Right-handed alpha
Helix 5	AA5	B	188	196	Right-handed alpha
Helix 6	AA6	B	198	210	Right-handed alpha
Helix 7	AA7	B	228	239	Right-handed alpha
Helix 8	AA8	B	242	245	Right-handed 310
Helix 9	AA9	B	246	252	Right-handed alpha
Helix 10	AB1	A	51	63	Right-handed alpha
Helix 11	AB2	A	64	66	Right-handed 310
Helix 12	AB3	A	83	91	Right-handed alpha
Helix 13	AB4	A	102	110	Right-handed 310
Helix 14	AB5	A	180	185	Right-handed alpha
Helix 15	AB6	A	185	196	Right-handed alpha
Helix 16	AB7	A	198	210	Right-handed alpha
Helix 17	AB8	A	228	239	Right-handed alpha
Helix 18	AB9	A	242	245	Right-handed 310
Helix 19	AC1	A	246	251	Right-handed alpha
Helix 20	AC2	C	51	61	Right-handed alpha
Helix 21	AC3	C	77	82	Right-handed alpha
Helix 22	AC4	C	83	91	Right-handed alpha
Helix 23	AC5	C	102	110	Right-handed 310
Helix 24	AC6	C	180	185	Right-handed alpha
Helix 25	AC7	C	188	196	Right-handed alpha
Helix 26	AC8	C	198	210	Right-handed alpha
Helix 27	AC9	C	228	239	Right-handed alpha
Helix 28	AD1	C	242	247	Right-handed 310
Helix 29	AD2	D	51	61	Right-handed alpha
Helix 30	AD3	D	64	66	Right-handed 310
Helix 31	AD4	D	79	91	Right-handed alpha
Helix 32	AD5	D	102	110	Right-handed 310
Helix 33	AD6	D	113	115	Right-handed 310
Helix 34	AD7	D	180	185	Right-handed alpha
Helix 35	AD8	D	188	196	Right-handed alpha
Helix 36	AD9	D	198	210	Right-handed alpha
Helix 37	AE1	D	228	239	Right-handed alpha
Helix 38	AE2	D	242	245	Right-handed 310
Helix 39	AE3	D	246	251	Right-handed alpha

There are 9 sheets in PDB entry 6QRQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	9	first strand
Strand 2	B	13	17	anti-parallel
Strand 3	B	33	37	anti-parallel
Strand 4	B	40	44	anti-parallel
Strand 5	B	68	72	parallel
Strand 6	B	95	99	parallel
Strand 7	B	117	120	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	128	first strand
Strand 2	B	134	139	anti-parallel
Strand 3	B	149	153	anti-parallel
Strand 4	B	158	162	anti-parallel
Strand 5	B	216	219	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	178	first strand
Strand 2	B	224	225	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	9	first strand
Strand 2	A	13	18	anti-parallel
Strand 3	A	32	37	anti-parallel
Strand 4	A	40	44	anti-parallel
Strand 5	A	68	72	parallel
Strand 6	A	95	99	parallel
Strand 7	A	117	120	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	128	first strand
Strand 2	A	134	139	anti-parallel
Strand 3	A	149	153	anti-parallel
Strand 4	A	158	162	anti-parallel
Strand 5	A	216	219	parallel
Strand 6	A	224	226	anti-parallel
Strand 7	A	177	178	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	9	first strand
Strand 2	C	13	17	anti-parallel
Strand 3	C	33	37	anti-parallel
Strand 4	C	40	44	anti-parallel
Strand 5	C	68	72	parallel
Strand 6	C	95	99	parallel
Strand 7	C	117	120	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	128	first strand
Strand 2	C	134	139	anti-parallel
Strand 3	C	149	153	anti-parallel
Strand 4	C	158	162	anti-parallel
Strand 5	C	216	219	parallel
Strand 6	C	224	226	anti-parallel
Strand 7	C	177	178	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	9	first strand
Strand 2	D	13	17	anti-parallel
Strand 3	D	33	37	anti-parallel
Strand 4	D	40	44	anti-parallel
Strand 5	D	68	72	parallel
Strand 6	D	95	99	parallel
Strand 7	D	117	120	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	128	first strand
Strand 2	D	134	139	anti-parallel
Strand 3	D	149	153	anti-parallel
Strand 4	D	158	162	anti-parallel
Strand 5	D	216	219	parallel
Strand 6	D	224	226	anti-parallel
Strand 7	D	177	178	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6QRQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6QRQ