Analysis of interatomic Contacts of Structural Units in PDB entry:
6QSP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QSP entry

There are 2 chains in PDB entry 6QSP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET -14ALA 391
B
 LYS 2ARG 239
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6QSP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 27Right-handed alpha
Helix 2
AA2
A
58 65Right-handed 310
Helix 3
AA3
A
66 91Right-handed alpha
Helix 4
AA4
A
105 119Right-handed alpha
Helix 5
AA5
A
129 134Right-handed 310
Helix 6
AA6
A
136 147Right-handed alpha
Helix 7
AA7
A
157 159Right-handed 310
Helix 8
AA8
A
160 175Right-handed alpha
Helix 9
AA9
A
190 200Right-handed alpha
Helix 10
AB1
A
257 272Right-handed alpha
Helix 11
AB2
A
274 278Right-handed 310
Helix 12
AB3
A
288 304Right-handed alpha
Helix 13
AB4
A
312 317Right-handed alpha
Helix 14
AB5
A
319 321Right-handed 310
Helix 15
AB6
A
322 338Right-handed alpha
Helix 16
AB7
B
19 28Right-handed alpha
Helix 17
AB8
B
47 54Right-handed alpha
Helix 18
AB9
B
55 72Right-handed alpha
Helix 19
AC1
B
85 98Right-handed alpha
Helix 20
AC2
B
103 109Right-handed alpha
Helix 21
AC3
B
110 112Right-handed 310
Helix 22
AC4
B
113 123Right-handed alpha
Helix 23
AC5
B
134 136Right-handed 310
Helix 24
AC6
B
137 152Right-handed alpha
Helix 25
AC7
B
167 171Right-handed 310
Helix 26
AC8
B
210 222Right-handed alpha
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There are 3 sheets in PDB entry 6QSP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 15 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 310first strand
Strand 2
A
280 282parallel
Strand 3
A
371 378parallel
Strand 4
A
382 390anti-parallel
Strand 5
A
236 245anti-parallel
Strand 6
A
2 10anti-parallel
Strand 7
A
223 230anti-parallel
Strand 8
A
180 187anti-parallel
Strand 9
A
95 100parallel
Strand 10
A
152 155parallel
Strand 11
B
128 133anti-parallel
Strand 12
B
76 80parallel
Strand 13
B
156 163parallel
Strand 14
B
183 201anti-parallel
Strand 15
B
3 13anti-parallel
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There are 16 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 310first strand
Strand 2
A
280 282parallel
Strand 3
A
371 378parallel
Strand 4
A
382 390anti-parallel
Strand 5
A
236 245anti-parallel
Strand 6
A
2 10anti-parallel
Strand 7
A
223 230anti-parallel
Strand 8
A
180 187anti-parallel
Strand 9
A
95 100parallel
Strand 10
A
152 155parallel
Strand 11
B
128 133anti-parallel
Strand 12
B
76 80parallel
Strand 13
B
156 163parallel
Strand 14
B
183 201anti-parallel
Strand 15
B
233 238anti-parallel
Strand 16
B
225 229anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 39first strand
Strand 2
A
43 48anti-parallel
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