Analysis of interatomic Contacts of Structural Units in PDB entry:
6QSQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QSQ entry

There is 1 chain in PDB entry 6QSQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1LEU 503
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6QSQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 29Right-handed alpha
Helix 2
AA2
A
39 48Right-handed alpha
Helix 3
AA3
A
64 75Right-handed alpha
Helix 4
AA4
A
94 102Right-handed alpha
Helix 5
AA5
A
116 121Right-handed alpha
Helix 6
AA6
A
131 143Right-handed alpha
Helix 7
AA7
A
151 155Right-handed 310
Helix 8
AA8
A
157 163Right-handed 310
Helix 9
AA9
A
164 174Right-handed alpha
Helix 10
AB1
A
189 197Right-handed alpha
Helix 11
AB2
A
204 211Right-handed alpha
Helix 12
AB3
A
227 237Right-handed alpha
Helix 13
AB4
A
244 257Right-handed alpha
Helix 14
AB5
A
271 278Right-handed alpha
Helix 15
AB6
A
280 303Right-handed alpha
Helix 16
AB7
A
338 342Right-handed 310
Helix 17
AB8
A
355 363Right-handed alpha
Helix 18
AB9
A
367 378Right-handed alpha
Helix 19
AC1
A
379 383Right-handed 310
Helix 20
AC2
A
384 396Right-handed alpha
Helix 21
AC3
A
401 410Right-handed alpha
Helix 22
AC4
A
435 439Right-handed 310
Helix 23
AC5
A
444 457Right-handed alpha
Helix 24
AC6
A
477 482Right-handed alpha
Helix 25
AC7
A
483 485Right-handed 310
Helix 26
AC8
A
490 500Right-handed alpha
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There are 4 sheets in PDB entry 6QSQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 202first strand
Strand 2
A
216 219parallel
Strand 3
A
146 150parallel
Strand 4
A
105 113parallel
Strand 5
A
263 269parallel
Strand 6
A
5 11parallel
Strand 7
A
308 314parallel
Strand 8
A
470 475anti-parallel
Strand 9
A
49 54anti-parallel
Strand 10
A
487 489parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 318first strand
Strand 2
A
465 466anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 323first strand
Strand 2
A
458 459anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 413first strand
Strand 2
A
428 430anti-parallel
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