Analysis of interatomic Contacts of Structural Units in PDB entry:
6QSS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6QSS entry

There are 4 chains in PDB entry 6QSS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	ILE 308
B	ARG 3	LEU 309
C	ALA 2	LEU 309
D	ARG 3	LEU 309

There are 48 helices in PDB entry 6QSS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	27	Right-handed alpha
Helix 2	AA2	A	41	58	Right-handed alpha
Helix 3	AA3	A	68	72	Right-handed 310
Helix 4	AA4	A	91	111	Right-handed alpha
Helix 5	AA5	A	125	138	Right-handed alpha
Helix 6	AA6	A	148	164	Right-handed alpha
Helix 7	AA7	A	166	168	Right-handed 310
Helix 8	AA8	A	196	204	Right-handed alpha
Helix 9	AA9	A	208	228	Right-handed alpha
Helix 10	AB1	A	231	247	Right-handed alpha
Helix 11	AB2	A	283	286	Right-handed 310
Helix 12	AB3	A	287	307	Right-handed alpha
Helix 13	AB4	B	14	27	Right-handed alpha
Helix 14	AB5	B	41	58	Right-handed alpha
Helix 15	AB6	B	68	72	Right-handed 310
Helix 16	AB7	B	91	111	Right-handed alpha
Helix 17	AB8	B	125	138	Right-handed alpha
Helix 18	AB9	B	148	164	Right-handed alpha
Helix 19	AC1	B	166	168	Right-handed 310
Helix 20	AC2	B	196	202	Right-handed alpha
Helix 21	AC3	B	208	228	Right-handed alpha
Helix 22	AC4	B	231	247	Right-handed alpha
Helix 23	AC5	B	283	286	Right-handed 310
Helix 24	AC6	B	287	306	Right-handed alpha
Helix 25	AC7	C	14	27	Right-handed alpha
Helix 26	AC8	C	41	58	Right-handed alpha
Helix 27	AC9	C	68	72	Right-handed 310
Helix 28	AD1	C	91	111	Right-handed alpha
Helix 29	AD2	C	125	138	Right-handed alpha
Helix 30	AD3	C	148	164	Right-handed alpha
Helix 31	AD4	C	166	168	Right-handed 310
Helix 32	AD5	C	196	203	Right-handed alpha
Helix 33	AD6	C	208	228	Right-handed alpha
Helix 34	AD7	C	231	247	Right-handed alpha
Helix 35	AD8	C	283	286	Right-handed 310
Helix 36	AD9	C	287	306	Right-handed alpha
Helix 37	AE1	D	14	27	Right-handed alpha
Helix 38	AE2	D	41	57	Right-handed alpha
Helix 39	AE3	D	68	72	Right-handed 310
Helix 40	AE4	D	91	111	Right-handed alpha
Helix 41	AE5	D	125	138	Right-handed alpha
Helix 42	AE6	D	148	164	Right-handed alpha
Helix 43	AE7	D	166	168	Right-handed 310
Helix 44	AE8	D	196	204	Right-handed alpha
Helix 45	AE9	D	208	228	Right-handed alpha
Helix 46	AF1	D	231	247	Right-handed alpha
Helix 47	AF2	D	283	286	Right-handed 310
Helix 48	AF3	D	287	308	Right-handed alpha

There are 12 sheets in PDB entry 6QSS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	66	first strand
Strand 2	A	32	36	parallel
Strand 3	A	7	11	parallel
Strand 4	A	77	80	parallel
Strand 5	A	117	121	parallel
Strand 6	A	141	145	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	175	first strand
Strand 2	A	183	191	anti-parallel
Strand 3	A	194	195	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	251	261	first strand
Strand 2	A	265	275	anti-parallel
Strand 3	A	279	281	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	66	first strand
Strand 2	B	30	36	parallel
Strand 3	B	4	11	parallel
Strand 4	B	77	80	parallel
Strand 5	B	117	121	parallel
Strand 6	B	141	145	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	175	first strand
Strand 2	B	183	191	anti-parallel
Strand 3	B	194	195	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	251	261	first strand
Strand 2	B	265	275	anti-parallel
Strand 3	B	279	281	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	66	first strand
Strand 2	C	32	36	parallel
Strand 3	C	7	11	parallel
Strand 4	C	77	80	parallel
Strand 5	C	117	121	parallel
Strand 6	C	141	145	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	175	first strand
Strand 2	C	183	191	anti-parallel
Strand 3	C	194	195	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	251	261	first strand
Strand 2	C	265	275	anti-parallel
Strand 3	C	279	281	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	66	first strand
Strand 2	D	30	36	parallel
Strand 3	D	4	11	parallel
Strand 4	D	77	80	parallel
Strand 5	D	117	121	parallel
Strand 6	D	141	145	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	170	175	first strand
Strand 2	D	183	191	anti-parallel
Strand 3	D	194	195	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	251	261	first strand
Strand 2	D	265	275	anti-parallel
Strand 3	D	279	281	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6QSS

Analysis of interatomic Contacts of Structural Units in PDB entry:
6QSS