Analysis of interatomic Contacts of Structural Units in PDB entry:
6QSZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QSZ entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 24 chains in PDB entry 6QSZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 970ILE 1084
B
 THR 1446PRO 1449
B
 ASP 1451SER 1454
C
 LEU 969ILE 1084
D
 THR 1446PRO 1449
D
 ASP 1451SER 1454
E
 ASN 968ILE 1084
F
 THR 1446PRO 1449
F
 ASP 1451SER 1454
G
 ASN 968ILE 1084
H
 SER 1445PRO 1449
H
 ASP 1451ASP 1455
I
 SER 970ILE 1084
J
 ASP 1447PRO 1449
J
 ASP 1451PRO 1453
K
 LEU 969GLN 1085
L
 SER 1445PRO 1449
L
 ASP 1451SER 1454
M
 LEU 969ILE 1084
N
 SER 1445PRO 1449
N
 ASP 1451SER 1454
O
 SER 970ILE 1084
P
 SER 1445PRO 1449
P
 ASP 1451SER 1454
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 6QSZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
970 983Right-handed alpha
Helix 2
AA2
A
998 1019Right-handed alpha
Helix 3
AA3
A
1027 1031Right-handed 310
Helix 4
AA4
A
1039 1043Right-handed 310
Helix 5
AA5
A
1047 1058Right-handed alpha
Helix 6
AA6
A
1070 1079Right-handed alpha
Helix 7
AA7
C
970 983Right-handed alpha
Helix 8
AA8
C
998 1019Right-handed alpha
Helix 9
AA9
C
1027 1031Right-handed 310
Helix 10
AB1
C
1039 1043Right-handed 310
Helix 11
AB2
C
1047 1059Right-handed alpha
Helix 12
AB3
C
1069 1080Right-handed alpha
Helix 13
AB4
E
970 983Right-handed alpha
Helix 14
AB5
E
998 1019Right-handed alpha
Helix 15
AB6
E
1027 1031Right-handed 310
Helix 16
AB7
E
1039 1043Right-handed 310
Helix 17
AB8
E
1047 1058Right-handed alpha
Helix 18
AB9
E
1069 1081Right-handed alpha
Helix 19
AC1
G
970 983Right-handed alpha
Helix 20
AC2
G
998 1019Right-handed alpha
Helix 21
AC3
G
1027 1031Right-handed 310
Helix 22
AC4
G
1039 1043Right-handed 310
Helix 23
AC5
G
1047 1058Right-handed alpha
Helix 24
AC6
G
1069 1080Right-handed alpha
Helix 25
AC7
I
971 983Right-handed alpha
Helix 26
AC8
I
998 1019Right-handed alpha
Helix 27
AC9
I
1027 1031Right-handed 310
Helix 28
AD1
I
1039 1043Right-handed 310
Helix 29
AD2
I
1047 1059Right-handed alpha
Helix 30
AD3
I
1069 1080Right-handed alpha
Helix 31
AD4
K
970 983Right-handed alpha
Helix 32
AD5
K
998 1019Right-handed alpha
Helix 33
AD6
K
1027 1031Right-handed 310
Helix 34
AD7
K
1039 1043Right-handed 310
Helix 35
AD8
K
1047 1059Right-handed alpha
Helix 36
AD9
K
1069 1081Right-handed alpha
Helix 37
AE1
M
970 983Right-handed alpha
Helix 38
AE2
M
998 1019Right-handed alpha
Helix 39
AE3
M
1039 1043Right-handed 310
Helix 40
AE4
M
1047 1059Right-handed alpha
Helix 41
AE5
M
1069 1080Right-handed alpha
Helix 42
AE6
O
971 983Right-handed alpha
Helix 43
AE7
O
998 1019Right-handed alpha
Helix 44
AE8
O
1027 1031Right-handed 310
Helix 45
AE9
O
1039 1043Right-handed 310
Helix 46
AF1
O
1047 1057Right-handed alpha
Helix 47
AF2
O
1069 1080Right-handed alpha
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There are 8 sheets in PDB entry 6QSZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1023 1024first strand
Strand 2
A
986 989parallel
Strand 3
A
1033 1036parallel
Strand 4
A
1066 1069parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1023 1024first strand
Strand 2
C
986 989parallel
Strand 3
C
1033 1035parallel
Strand 4
C
1066 1068parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1023 1024first strand
Strand 2
E
986 989parallel
Strand 3
E
1033 1035parallel
Strand 4
E
1066 1068parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
1023 1024first strand
Strand 2
G
986 989parallel
Strand 3
G
1033 1035parallel
Strand 4
G
1066 1068parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
1023 1024first strand
Strand 2
I
986 989parallel
Strand 3
I
1033 1035parallel
Strand 4
I
1066 1068parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
1023 1024first strand
Strand 2
K
986 989parallel
Strand 3
K
1033 1035parallel
Strand 4
K
1066 1068parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
1023 1025first strand
Strand 2
M
986 989parallel
Strand 3
M
1033 1035parallel
Strand 4
M
1066 1068parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
1023 1025first strand
Strand 2
O
986 989parallel
Strand 3
O
1033 1035parallel
Strand 4
O
1066 1068parallel
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