Analysis of interatomic Contacts of Structural Units in PDB entry:
6QTI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QTI entry

There are 2 chains in PDB entry 6QTI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 5GLN 1042
B
 VAL 5GLN 1042
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 88 helices in PDB entry 6QTI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 37Right-handed 310
Helix 2
AA2
A
59 67Right-handed alpha
Helix 3
AA3
A
117 127Right-handed alpha
Helix 4
AA4
A
135 137Right-handed 310
Helix 5
AA5
A
140 144Right-handed 310
Helix 6
AA6
A
147 165Right-handed alpha
Helix 7
AA7
A
194 205Right-handed alpha
Helix 8
AA8
A
216 227Right-handed alpha
Helix 9
AA9
A
250 264Right-handed alpha
Helix 10
AB1
A
337 356Right-handed alpha
Helix 11
AB2
A
375 383Right-handed alpha
Helix 12
AB3
A
411 420Right-handed alpha
Helix 13
AB4
A
421 423Right-handed 310
Helix 14
AB5
A
424 449Right-handed alpha
Helix 15
AB6
A
452 475Right-handed alpha
Helix 16
AB7
A
477 479Right-handed 310
Helix 17
AB8
A
480 492Right-handed alpha
Helix 18
AB9
A
494 502Right-handed alpha
Helix 19
AC1
A
511 540Right-handed alpha
Helix 20
AC2
A
551 554Right-handed 310
Helix 21
AC3
A
555 572Right-handed alpha
Helix 22
AC4
A
576 594Right-handed alpha
Helix 23
AC5
A
602 624Right-handed alpha
Helix 24
AC6
A
626 648Right-handed alpha
Helix 25
AC7
A
652 654Right-handed 310
Helix 26
AC8
A
655 682Right-handed alpha
Helix 27
AC9
A
683 686Right-handed 310
Helix 28
AD1
A
691 722Right-handed alpha
Helix 29
AD2
A
735 748Right-handed alpha
Helix 30
AD3
A
748 753Right-handed alpha
Helix 31
AD4
A
758 781Right-handed alpha
Helix 32
AD5
A
787 810Right-handed alpha
Helix 33
AD6
A
812 837Right-handed alpha
Helix 34
AD7
A
840 846Right-handed alpha
Helix 35
AD8
A
870 881Right-handed alpha
Helix 36
AD9
A
889 895Right-handed alpha
Helix 37
AE1
A
897 911Right-handed alpha
Helix 38
AE2
A
928 938Right-handed alpha
Helix 39
AE3
A
940 942Right-handed 310
Helix 40
AE4
A
947 951Right-handed alpha
Helix 41
AE5
A
971 976Right-handed alpha
Helix 42
AE6
A
988 992Right-handed 310
Helix 43
AE7
A
1025 1042Right-handed alpha
Helix 44
AE8
B
33 38Right-handed alpha
Helix 45
AE9
B
59 66Right-handed alpha
Helix 46
AF1
B
73 78Right-handed alpha
Helix 47
AF2
B
99 101Right-handed 310
Helix 48
AF3
B
117 126Right-handed alpha
Helix 49
AF4
B
147 165Right-handed alpha
Helix 50
AF5
B
194 207Right-handed alpha
Helix 51
AF6
B
216 227Right-handed alpha
Helix 52
AF7
B
250 265Right-handed alpha
Helix 53
AF8
B
287 292Right-handed alpha
Helix 54
AF9
B
333 336Right-handed 310
Helix 55
AG1
B
337 356Right-handed alpha
Helix 56
AG2
B
375 383Right-handed alpha
Helix 57
AG3
B
411 421Right-handed alpha
Helix 58
AG4
B
424 449Right-handed alpha
Helix 59
AG5
B
452 474Right-handed alpha
Helix 60
AG6
B
477 479Right-handed 310
Helix 61
AG7
B
480 492Right-handed alpha
Helix 62
AG8
B
494 501Right-handed alpha
Helix 63
AG9
B
511 540Right-handed alpha
Helix 64
AH1
B
551 554Right-handed 310
Helix 65
AH2
B
555 571Right-handed alpha
Helix 66
AH3
B
576 594Right-handed alpha
Helix 67
AH4
B
602 622Right-handed alpha
Helix 68
AH5
B
626 651Right-handed alpha
Helix 69
AH6
B
655 682Right-handed alpha
Helix 70
AH7
B
683 686Right-handed 310
Helix 71
AH8
B
693 721Right-handed alpha
Helix 72
AH9
B
734 748Right-handed alpha
Helix 73
AI1
B
748 753Right-handed alpha
Helix 74
AI2
B
757 781Right-handed alpha
Helix 75
AI3
B
787 811Right-handed alpha
Helix 76
AI4
B
812 837Right-handed alpha
Helix 77
AI5
B
840 846Right-handed alpha
Helix 78
AI6
B
870 881Right-handed alpha
Helix 79
AI7
B
889 895Right-handed alpha
Helix 80
AI8
B
897 910Right-handed alpha
Helix 81
AI9
B
928 938Right-handed alpha
Helix 82
AJ1
B
940 942Right-handed 310
Helix 83
AJ2
B
946 951Right-handed alpha
Helix 84
AJ3
B
952 954Right-handed 310
Helix 85
AJ4
B
966 970Right-handed 310
Helix 86
AJ5
B
971 976Right-handed alpha
Helix 87
AJ6
B
988 992Right-handed 310
Helix 88
AJ7
B
1025 1042Right-handed alpha
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There are 10 sheets in PDB entry 6QTI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 71first strand
Strand 2
A
45 49parallel
Strand 3
A
15 18parallel
Strand 4
A
81 83parallel
Strand 5
A
107 110parallel
Strand 6
A
130 133parallel
Strand 7
A
384 387anti-parallel
Strand 8
A
390 391anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 91first strand
Strand 2
A
96 97anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 177first strand
Strand 2
A
180 181anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 210first strand
Strand 2
A
186 190parallel
Strand 3
A
270 273parallel
Strand 4
A
299 302parallel
Strand 5
A
326 328parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
867 868first strand
Strand 2
A
1019 1021parallel
Strand 3
A
995 998parallel
Strand 4
A
959 963parallel
Strand 5
A
883 888parallel
Strand 6
A
914 919parallel
Strand 7
A
944 946parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 71first strand
Strand 2
B
45 49parallel
Strand 3
B
15 18parallel
Strand 4
B
81 83parallel
Strand 5
B
107 110parallel
Strand 6
B
130 133parallel
Strand 7
B
384 387anti-parallel
Strand 8
B
390 391anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 91first strand
Strand 2
B
96 97anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 177first strand
Strand 2
B
180 181anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 210first strand
Strand 2
B
186 190parallel
Strand 3
B
270 273parallel
Strand 4
B
299 302parallel
Strand 5
B
326 328parallel
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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
867 868first strand
Strand 2
B
1019 1023parallel
Strand 3
B
994 999parallel
Strand 4
B
959 963parallel
Strand 5
B
883 888parallel
Strand 6
B
914 918parallel
Strand 7
B
944 945parallel
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