Analysis of interatomic Contacts of Structural Units in PDB entry:
6QTM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QTM entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 9 chains in PDB entry 6QTM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 969ILE 1084
B
 LEU 969ILE 1084
C
 SER 970ILE 1084
D
 SER 1091SER 1094
D
 PRO 1096PRO 1097
E
 SER 1091SER 1094
E
 PRO 1096PRO 1097
F
 SER 1091SER 1094
F
 PRO 1096SER 1100
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6QTM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
971 983Right-handed alpha
Helix 2
AA2
A
998 1019Right-handed alpha
Helix 3
AA3
A
1039 1043Right-handed 310
Helix 4
AA4
A
1047 1056Right-handed alpha
Helix 5
AA5
A
1069 1081Right-handed alpha
Helix 6
AA6
B
970 983Right-handed alpha
Helix 7
AA7
B
998 1019Right-handed alpha
Helix 8
AA8
B
1027 1031Right-handed 310
Helix 9
AA9
B
1039 1043Right-handed 310
Helix 10
AB1
B
1047 1059Right-handed alpha
Helix 11
AB2
B
1069 1080Right-handed alpha
Helix 12
AB3
C
971 983Right-handed alpha
Helix 13
AB4
C
998 1019Right-handed alpha
Helix 14
AB5
C
1039 1043Right-handed 310
Helix 15
AB6
C
1047 1057Right-handed alpha
Helix 16
AB7
C
1069 1080Right-handed alpha
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There are 3 sheets in PDB entry 6QTM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1023 1025first strand
Strand 2
A
986 989parallel
Strand 3
A
1033 1035parallel
Strand 4
A
1066 1068parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1023 1025first strand
Strand 2
B
986 989parallel
Strand 3
B
1033 1035parallel
Strand 4
B
1066 1068parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1023 1025first strand
Strand 2
C
986 989parallel
Strand 3
C
1033 1035parallel
Strand 4
C
1066 1068parallel
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