Analysis of interatomic Contacts of Structural Units in PDB entry:
6QTT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QTT entry

There are 3 chains in PDB entry 6QTT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 347CYS 509
A
 VAL 511ALA 675
B
 LEU 28TYR 35
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There is 1 helix in PDB entry 6QTT. Click on helix number for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
400 406Right-handed alpha
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There are 7 sheets in PDB entry 6QTT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 362first strand
Strand 2
A
668 674anti-parallel
Strand 3
A
658 663anti-parallel
Strand 4
A
647 652anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 379first strand
Strand 2
A
385 390anti-parallel
Strand 3
A
394 399anti-parallel
Strand 4
A
415 418anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 428first strand
Strand 2
A
435 440anti-parallel
Strand 3
A
445 449anti-parallel
Strand 4
A
455 459anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
466 471first strand
Strand 2
A
478 483anti-parallel
Strand 3
A
487 492anti-parallel
Strand 4
A
500 503anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
508 513first strand
Strand 2
A
520 525anti-parallel
Strand 3
A
530 534anti-parallel
Strand 4
A
543 545anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
552 557first strand
Strand 2
A
562 567anti-parallel
Strand 3
A
571 576anti-parallel
Strand 4
A
581 586anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
598 600first strand
Strand 2
A
604 607anti-parallel
Strand 3
A
613 618anti-parallel
Strand 4
A
626 629anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il